PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT55165.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 85aa    MW: 9795.14 Da    PI: 9.8322
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT55165.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF91.73.5e-29959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                krienk+ rqvtfskRr g+lKK +E+SvLCdaeva+i+fs++gkl+eys+
  PHT55165.1  9 KRIENKISRQVTFSKRRSGLLKKTNEISVLCDAEVALIVFSPNGKLFEYST 59
                79***********************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 85 aa     Download sequence    
MGRGRVELKR IENKISRQVT FSKRRSGLLK KTNEISVLCD AEVALIVFSP NGKLFEYSTQ  60
SSMESILERY ENYSYAERKL NGNDT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26310.14e-44MIKC_MADS family protein