PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT55213.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 120aa    MW: 13884.2 Da    PI: 9.59
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT55213.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF27.24.9e-091453342
                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                ie +   +vtfskR++ ++K  +ELS+  +  v vi+fss
  PHT55213.1 14 IECEQAYTVTFSKRKKALFKEKSELSIRPEEVVDVILFSS 53
                66677789********************999999999997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    
MAKKGRQKIV MKLIECEQAY TVTFSKRKKA LFKEKSELSI RPEEVVDVIL FSSGKPCSYG  60
TTCIEKIIDN FFDVKLEDRQ RDHVDVGKSN VFKAFEDLCK ESQALDMKLK QRRIRSCTLA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36590.14e-11M-type_MADS family protein