PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT55369.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB

Protein Properties

Length: 330aa MW: 36889.1 Da PI: 5.288

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT55369.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.5	3.1e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd lv +v+++G+g+W++++ + g++R+ k+c++rw +yl PHT55369.1 14 KGPWTPEEDIMLVSYVQEHGPGNWRAVPTKTGLRRCSKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	49.7	8.7e-16	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T +E++ ++++ ++lG++ W++Ia++++ Rt++++k++w+++l PHT55369.1 67 RGNFTDQEEKTIIQLQALLGNK-WAAIASYLP-ERTDNDIKNYWNTHL 112 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence
MGRLPCCDKV GVKKGPWTPE EDIMLVSYVQ EHGPGNWRAV PTKTGLRRCS KSCRLRWTNY 60 LRPGIKRGNF TDQEEKTIIQ LQALLGNKWA AIASYLPERT DNDIKNYWNT HLKKKLKKFQ 120 LDQCSGSDDH LFYVENGLTH LSSSNSRGQW ERTLQTDINM AKKALHNALS LENSTSPLIN 180 IKQENPQVSS STYASSTENI SRLLQGWMRS STSENSKTSS NNIATTDSSS CDGTPNAESK 240 GGMGLMEAFE SLFGLESFES SSSDEFSQTT SPQAEATKVE IKKEENENVE APAVPLSIIL 300 ENWLLDENTL NIQAKDDLTT FSFDETAPLF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47600.1	1e-95	MYB family protein