PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT55581.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family NF-YA
Protein Properties Length: 312aa    MW: 35148 Da    PI: 9.46
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT55581.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA104.21.2e-32217273158
   CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                 dep++VNaKQy++Il+RRq+Rak+e+ekkl  ksrkpylheSRh hAl+R+Rg+gGrF
  PHT55581.1 217 DEPVFVNAKQYHGILRRRQSRAKAESEKKL-LKSRKPYLHESRHLHALKRARGCGGRF 273
                 79****************************.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    
MKWRLASGIL CDKKVPPKLK GKFYRVVVRL ALLYGAACWP VKKAYIQKMK VAEIRMLRWM  60
YGCNRKDRIK NEVIRDEVEV ASVEAKMRSE VEMVWSCDDE EHGCPSAGGV RDGSENEQPD  120
NQSESHNESS SPATGMSVPG TLTPNMNYVM PTQLGNGNAM LQAQTAYPYP DPYYRSIFAP  180
YDAQPYPTQT YPAQPMVHVQ LMGIQQAGVP LPSDAIDEPV FVNAKQYHGI LRRRQSRAKA  240
ESEKKLLKSR KPYLHESRHL HALKRARGCG GRFLTAKKTD NQQKQDESGD KSQVNINLES  300
GKDRIASSEN DS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.22e-60NF-YA family protein