PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT55795.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

TCP

Protein Properties

Length: 361aa MW: 40781.9 Da PI: 6.6132

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT55795.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	103.3	4.1e-32	86	189	1	102
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg....kaaksaa 95 a+g+kdrhsk++T++g++dRRvRls ++a++f+d qd+LG+d++sk+i+WL+++ak+ai++l + +s+s+c++ +s+ + s+++++ ++ ++++ PHT55795.1 86 ATGRKDRHSKVSTAKGPKDRRVRLSPNTAIQFYDEQDRLGYDRPSKAIDWLIKEAKAAIDALGEF--PSNSHCTKLNSKMQCSFDQQQnprfSSVSNTE 182 589***********************************************************998..66666955555555554444433543333333 PP TCP 96 kskksqk 102 ++ ++++ PHT55795.1 183 CGVQDNQ 189 3333333 PP

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence
MNHQLQVSDE EEEEEEAFQE NGIENLRSHY QNQHIQQLPQ PLCPKPAKWA NFTACEQELN 60 KVTEQMKPKR AKMDVIEVHG GRIIRATGRK DRHSKVSTAK GPKDRRVRLS PNTAIQFYDE 120 QDRLGYDRPS KAIDWLIKEA KAAIDALGEF PSNSHCTKLN SKMQCSFDQQ QNPRFSSVSN 180 TECGVQDNQK EVNYDIPIQN VNLFPSSDGS KNPFFSEFHS YPNVHFLNFQ SVNTILSSSN 240 HHQGSFSTTT SIPLNSNMEM ARFRRSLNEN IASSNSRNGE VGEDSSLNHL AHHFPSVLSQ 300 NQVFSHREPL QSSIFPLTRD PLSTQHHTLS YGFANDGFSG VTSSAPRIQG EEEQGTMFSA 360 S

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence

MNHQLQVSDE EEEEEEAFQE NGIENLRSHY QNQHIQQLPQ PLCPKPAKWA NFTACEQELN  60
KVTEQMKPKR AKMDVIEVHG GRIIRATGRK DRHSKVSTAK GPKDRRVRLS PNTAIQFYDE  120
QDRLGYDRPS KAIDWLIKEA KAAIDALGEF PSNSHCTKLN SKMQCSFDQQ QNPRFSSVSN  180
TECGVQDNQK EVNYDIPIQN VNLFPSSDGS KNPFFSEFHS YPNVHFLNFQ SVNTILSSSN  240
HHQGSFSTTT SIPLNSNMEM ARFRRSLNEN IASSNSRNGE VGEDSSLNHL AHHFPSVLSQ  300
NQVFSHREPL QSSIFPLTRD PLSTQHHTLS YGFANDGFSG VTSSAPRIQG EEEQGTMFSA  360
S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31070.1	5e-37	TCP family protein