PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT55921.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family HD-ZIP
Protein Properties Length: 178aa    MW: 20608.1 Da    PI: 8.3421
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT55921.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox611.9e-191670256
                T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                +++ ++t++q++ Le  F +n++++ +++ +LA++lgL+ rqV +W+qN+Ra++k
  PHT55921.1 16 CHKKRLTQDQVRLLEISFSSNNKLDSDRKSQLAQELGLPPRQVAIWYQNKRARWK 70
                567789************************************************9 PP
2HD-ZIP_I/II113.81.1e-3617108293
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  +k+rl+++qv+lLE sF++++kL+++rK++la+eLgl prqva+W+qn+RAR+kt+ lE+dy++L++++d+  e+ne+L+ eve+Lr+el++
   PHT55921.1  17 HKKRLTQDQVRLLEISFSSNNKLDSDRKSQLAQELGLPPRQVAIWYQNKRARWKTQSLEVDYKTLQQRLDTALEDNEKLKLEVERLRKELNK 108
                  69**************************************************************************************9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    
MDFLNVQSTR KSHLKCHKKR LTQDQVRLLE ISFSSNNKLD SDRKSQLAQE LGLPPRQVAI  60
WYQNKRARWK TQSLEVDYKT LQQRLDTALE DNEKLKLEVE RLRKELNKTQ EMLLGFNTTT  120
NYSSISSSCD EVGSTSCLQL HDQSKHNHLD KEFFACLIGD EGHFGTPNGH NFFTSSMS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11020RKSHLKCHKKR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53980.12e-26HD-ZIP family protein