PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT55946.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family HSF
Protein Properties Length: 201aa    MW: 23368.8 Da    PI: 9.1973
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT55946.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind107.51e-33311262102
                   HHHHHHHHHC....TGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
  HSF_DNA-bind   2 Flkklyeile....deelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                   Fl+k+y++le    ++++++++sw+ +g+ fvv+ + ef++ +LpkyFkh+nf+SF+RQLn+YgFkk+ +++         weF+h++F+kg ++ll
    PHT55946.1  31 FLSKTYDLLEeqeeESNINKIVSWNGEGSGFVVWCPAEFSEVMLPKYFKHNNFSSFIRQLNTYGFKKIASKR---------WEFQHEKFQKGCRHLL 118
                   9*********555555999**************************************************999.........**************** PP

                   XXXXXXXX CS
  HSF_DNA-bind  95 ekikrkks 102
                   ++i rkk 
    PHT55946.1 119 SEITRKKY 126
                   *****986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    
MATDAIPAPV SDQNLSRKIG RSSRMKCPAP FLSKTYDLLE EQEEESNINK IVSWNGEGSG  60
FVVWCPAEFS EVMLPKYFKH NNFSSFIRQL NTYGFKKIAS KRWEFQHEKF QKGCRHLLSE  120
ITRKKYEPSA FPTYLNPSAK NIILGSTKEE INTSRQLLME ENQNLKREKM ELQMQIAHFK  180
ALEVKLLQCL TQCMESPHNK N
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.12e-40HSF family protein