PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT56020.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

Protein Properties

Length: 1043aa MW: 114199 Da PI: 5.5421

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT56020.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	56.9	3.8e-18	334	433	1	98
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+k l+ sd+++ grlvlpkk+ae++ ++++e++ l+++d++g++W +++++ +++s++yvl+ G + +L++gD+v+F++++ e++lv++ PHT56020.1 334 FEKMLSASDAGRIGRLVLPKKCAEAYfpPISNPEGVPLKMKDLKGNEWMFQFRFwpNNNSRMYVLE-GVTPCIQLMQLQAGDIVTFSRIE-PEGKLVMG 430 89************************666678899***********99899999999.*******************887.78888888 PP EE- CS B3 96 vfr 98 ++ PHT56020.1 431 GRK 433 776 PP

Sequence ? help Back to Top
Protein Sequence Length: 1043 aa Download sequence
MSSSGAPSAN ACFNRNCKEV VERPNKGWRR RTGEFADLCD RCGSAYDDGK FCETFHLNSS 60 GWRSCESCGK QIHCGCIVSF HTFVLLDAGG IECISCARKS FILTPNPAWP PPSFFLPLQP 120 ERIKDVNSWN PIAGSGPVPW RQAPGLFNGS TFQNELQHKV PFPDATGSID RLSLGERPSA 180 SLSEINRKDC CEKLMTGKLK IGVPGTLENG YAGLNREEPQ SCISGPRQLS YANNDLSAPS 240 FGLTVGSACN YEPTDHSKVS VSVPQQTTVS NPLGKQLGGH ATVDSAGETQ VRNSKIRGDG 300 RGKHHLLPRY WPRITDEELQ RLSEDSNSVI TPLFEKMLSA SDAGRIGRLV LPKKCAEAYF 360 PPISNPEGVP LKMKDLKGNE WMFQFRFWPN NNSRMYVLEG VTPCIQLMQL QAGDIVTFSR 420 IEPEGKLVMG GRKASTILTT DQGSEAFCNG NGVTTNGNVI TKSSKFSEEV RANSTKKGFS 480 STTHVAATSA RAETKMSDDL VKESLGNNRS IHCKRKGSML GSKRKRLRID NEDLVELKVT 540 VVQAQGLMRP PSSGAPTVIV IEGCEIEEYE QADAPIIGRP TIPHMDHLGE KIQWVQCEDC 600 FKWRKVPDDA VLPSRWTCSE NSRDPERSVC SAVQELTADH LRDLLPHIDK GLLKLHDACT 660 TSKKMKASTQ EMELVETLDG LDALANLAIL DEGETPPASS QATTKHPRHR PGCTCIVCIQ 720 PPSGKGPKHD QSCDCNVCKS VKRRFKTLML KREKKLSEKE AEATCQKLLP QLSGQLLDAD 780 DIQESIDDTA HFSPQHGEEL NNEGSVDDPN YLNEKKSPVD DPNYLNKKSP VDDPNYLNEK 840 KSLVDDSNYL NDKKSPDDDP NCRNEKKSSV DDPDYPYEKS SVDDPDSLAE KKSSDDDPDS 900 LAEKKSSDDD SNSLAEKKSS DDDSNSLAEK KSSDDDSNSL TEKKSSASPF KGEIDLNAKP 960 ERDDELSPGS DSGSMMRILK DAAEQYVRHC GNGSSVDNQK SGDGAGETNS SNCVAVSASH 1020 QPDVDHNRPL PIGTAASLAP NDQ

Sequence ? help Back to Top

Protein Sequence Length: 1043 aa Download sequence

MSSSGAPSAN ACFNRNCKEV VERPNKGWRR RTGEFADLCD RCGSAYDDGK FCETFHLNSS  60
GWRSCESCGK QIHCGCIVSF HTFVLLDAGG IECISCARKS FILTPNPAWP PPSFFLPLQP  120
ERIKDVNSWN PIAGSGPVPW RQAPGLFNGS TFQNELQHKV PFPDATGSID RLSLGERPSA  180
SLSEINRKDC CEKLMTGKLK IGVPGTLENG YAGLNREEPQ SCISGPRQLS YANNDLSAPS  240
FGLTVGSACN YEPTDHSKVS VSVPQQTTVS NPLGKQLGGH ATVDSAGETQ VRNSKIRGDG  300
RGKHHLLPRY WPRITDEELQ RLSEDSNSVI TPLFEKMLSA SDAGRIGRLV LPKKCAEAYF  360
PPISNPEGVP LKMKDLKGNE WMFQFRFWPN NNSRMYVLEG VTPCIQLMQL QAGDIVTFSR  420
IEPEGKLVMG GRKASTILTT DQGSEAFCNG NGVTTNGNVI TKSSKFSEEV RANSTKKGFS  480
STTHVAATSA RAETKMSDDL VKESLGNNRS IHCKRKGSML GSKRKRLRID NEDLVELKVT  540
VVQAQGLMRP PSSGAPTVIV IEGCEIEEYE QADAPIIGRP TIPHMDHLGE KIQWVQCEDC  600
FKWRKVPDDA VLPSRWTCSE NSRDPERSVC SAVQELTADH LRDLLPHIDK GLLKLHDACT  660
TSKKMKASTQ EMELVETLDG LDALANLAIL DEGETPPASS QATTKHPRHR PGCTCIVCIQ  720
PPSGKGPKHD QSCDCNVCKS VKRRFKTLML KREKKLSEKE AEATCQKLLP QLSGQLLDAD  780
DIQESIDDTA HFSPQHGEEL NNEGSVDDPN YLNEKKSPVD DPNYLNKKSP VDDPNYLNEK  840
KSLVDDSNYL NDKKSPDDDP NCRNEKKSSV DDPDYPYEKS SVDDPDSLAE KKSSDDDPDS  900
LAEKKSSDDD SNSLAEKKSS DDDSNSLAEK KSSDDDSNSL TEKKSSASPF KGEIDLNAKP  960
ERDDELSPGS DSGSMMRILK DAAEQYVRHC GNGSSVDNQK SGDGAGETNS SNCVAVSASH  1020
QPDVDHNRPL PIGTAASLAP NDQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32010.1	1e-137	B3 family protein