PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT56347.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

TALE

Protein Properties

Length: 352aa MW: 39425.4 Da PI: 6.2338

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT56347.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.7	2.3e-09	279	313	21	55
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 k +yps++++ LA+++gL+++q+ +WF N+R ++ PHT56347.1 279 KWPYPSESQKLALAESTGLDQKQINNWFINQRKRH 313 569*****************************885 PP
2	ELK	41.2	3.5e-14	233	254	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK qLlrKYsgyLgsLkqEF+ PHT56347.1 233 ELKGQLLRKYSGYLGSLKQEFM 254 9********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence
MEGGSNGNNT SCLMMMGYGD HDTNSNNNNN SGSGTLCTPP MMMMMMPPPP TSLTNNSNAE 60 TSNNNHNILI LPFMDNNNPH EDHGNSSSSS TSSIKSKIMA HPHYPRLLAA YINCQKIGAP 120 PEVVARLEEL CATSAAMGRT SGGGGIVGED PALDQFMEAY CEMLTKYEQE LSKPFKEAMV 180 FLSRIECQFK ALTLAANSSH ESALGEAMDR NGSSDEEVDV NNGFVDPQAE DRELKGQLLR 240 KYSGYLGSLK QEFMKKRKKG KLPKEARQQL LDWWTRHYKW PYPSESQKLA LAESTGLDQK 300 QINNWFINQR KRHWKPSEDM QFVVMDAAHP HNYYMDNVLA NHFPMDMTPS LL

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence

MEGGSNGNNT SCLMMMGYGD HDTNSNNNNN SGSGTLCTPP MMMMMMPPPP TSLTNNSNAE  60
TSNNNHNILI LPFMDNNNPH EDHGNSSSSS TSSIKSKIMA HPHYPRLLAA YINCQKIGAP  120
PEVVARLEEL CATSAAMGRT SGGGGIVGED PALDQFMEAY CEMLTKYEQE LSKPFKEAMV  180
FLSRIECQFK ALTLAANSSH ESALGEAMDR NGSSDEEVDV NNGFVDPQAE DRELKGQLLR  240
KYSGYLGSLK QEFMKKRKKG KLPKEARQQL LDWWTRHYKW PYPSESQKLA LAESTGLDQK  300
QINNWFINQR KRHWKPSEDM QFVVMDAAHP HNYYMDNVLA NHFPMDMTPS LL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	249	258	LKQEFMKKRK
2	255	259	KKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62360.1	1e-136	TALE family protein