PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT56417.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family B3
Protein Properties Length: 219aa    MW: 25220.3 Da    PI: 9.8064
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT56417.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.21.1e-16115194587
                 -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
          B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                 +++ +++++++l+lpk fa+++ +  +   +++l de+ r W+v l  +  ++r+ +++GW +F kang+++gD+ +F+l+++
  PHT56417.1 115 TIKRYTFTKAILCLPKGFAKSYRLMDRH--EMILVDEKQRLWTVWL-GKMDPRRFGIKSGWPQFRKANGVQVGDTYMFELTDN 194
                 568899****************666433..8***************.6888889*************************9874 PP
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    
MGRLVRRCGG SVQXXXXXWW VGLLMAIPAF VGVFYGFSGE VVVDGIWKRG GSRWPMFLVP  60
EGDYMTFEVV SDGGKPIWKF RLIKDLRHKA PDMTTPISQI PASTSADANP HFISTIKRYT  120
FTKAILCLPK GFAKSYRLMD RHEMILVDEK QRLWTVWLGK MDPRRFGIKS GWPQFRKANG  180
VQVGDTYMFE LTDNGTIPIM HVHCEGFFIF LWFNDYLVC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31640.12e-10B3 family protein