PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT56544.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

HD-ZIP

Protein Properties

Length: 215aa MW: 25060.2 Da PI: 5.4795

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT56544.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62.4	6.7e-20	57	109	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++++eq++ Le+ F ++++ e++ +LA++lgL+ rqV vWFqNrRa++k PHT56544.1 57 KRKLSEEQVNLLEQSFGDEHKLESERKDKLAAELGLDPRQVAVWFQNRRARWK 109 45899***********************************************9 PP
2	HD-ZIP_I/II	120.7	7.7e-39	56	147	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +kr+ls+eqv+lLE+sF e+kLe+erK +la eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+++d+ + +++rLe+ev +L+e+l+e PHT56544.1 56 RKRKLSEEQVNLLEQSFGDEHKLESERKDKLAAELGLDPRQVAVWFQNRRARWKSKKLEEEYSKLKSEHDNNVVDKCRLETEVLKLKEQLSE 147 8****************************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence
MNHHQVAENE MVLINQYYPG IYTQLVPQQG ESKPRRRRKK NKLGEGSGSD QAMMMRKRKL 60 SEEQVNLLEQ SFGDEHKLES ERKDKLAAEL GLDPRQVAVW FQNRRARWKS KKLEEEYSKL 120 KSEHDNNVVD KCRLETEVLK LKEQLSEAEK EIQRLLFERC DGVSSNTSPS ASSFSMEAAM 180 EPPYLGEFGM EGMDDMFYGQ ENNYVQGLDW VNLYI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	35	59	RRRRKKNKLGEGSGSDQAMMMRKRK
2	36	60	RRRRKKNKLGEGSGSDQAMMMRKRK
3	37	61	RRRRKKNKLGEGSGSDQAMMMRKRK
4	38	62	RRRRKKNKLGEGSGSDQAMMMRKRK
5	56	85	RKRKLSEEQVNLLEQSFGDEHKLESERKDK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36740.1	9e-64	HD-ZIP family protein