PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT56549.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C2H2

Protein Properties

Length: 541aa MW: 56388.9 Da PI: 8.7575

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT56549.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.5	2.3e-05	66	88	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H PHT56549.1 66 FVCEICSKGFQRDQNLQLHRRGH 88 89*******************88 PP
2	zf-C2H2	14.4	0.00011	142	164	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+Lk H + + PHT56549.1 142 WKCDKCSKKYAVQSDLKAHSKIC 164 58*****************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 541 aa Download sequence
MPADPDNSSA MNDSTGSGEA SVSSSGNQVV PQKELVKKKR NLPGMPDPDA EVIALSPKTL 60 LATNRFVCEI CSKGFQRDQN LQLHRRGHNL PWKLRQRTSK EVKKRVYVCP EPSCVHHHPS 120 RALGDLTGIK KHFCRKHGEK KWKCDKCSKK YAVQSDLKAH SKICGTREYK CDCGTLFSRR 180 DSFITHRAFC DALAQESAKT LPEKPPNANE EPKTTAVASP SPPPPPPTPP APAPATESQP 240 PPPEAALPPA AAPKPLITPA VPPSSAVMSF ISSVQNPVAK ISADLLENPN TNPAGTATKQ 300 ILEETTAVAS LTGSCSSSCS NGSTSSSVFG SLFASSTASG SLPSQAPGFA VMFRAMPPDH 360 TLEMASPSST EPISLGLAMN HSSSIFRPAG QERRQYAPAP QPAMSATALL QKAAEMGAAA 420 TSSSLLRGFG VMSSTSSSNG QHEWSGRPID ANGASLSAGL GLGLPCDAGS GLKELMMGTP 480 SVFGPKHPTL DLLGLGMAAS VGPTPGLTAL ITSMGSNMDM VTSAGAFGSG DFSGKDLGRN 540 S

Sequence ? help Back to Top

Protein Sequence Length: 541 aa Download sequence

MPADPDNSSA MNDSTGSGEA SVSSSGNQVV PQKELVKKKR NLPGMPDPDA EVIALSPKTL  60
LATNRFVCEI CSKGFQRDQN LQLHRRGHNL PWKLRQRTSK EVKKRVYVCP EPSCVHHHPS  120
RALGDLTGIK KHFCRKHGEK KWKCDKCSKK YAVQSDLKAH SKICGTREYK CDCGTLFSRR  180
DSFITHRAFC DALAQESAKT LPEKPPNANE EPKTTAVASP SPPPPPPTPP APAPATESQP  240
PPPEAALPPA AAPKPLITPA VPPSSAVMSF ISSVQNPVAK ISADLLENPN TNPAGTATKQ  300
ILEETTAVAS LTGSCSSSCS NGSTSSSVFG SLFASSTASG SLPSQAPGFA VMFRAMPPDH  360
TLEMASPSST EPISLGLAMN HSSSIFRPAG QERRQYAPAP QPAMSATALL QKAAEMGAAA  420
TSSSLLRGFG VMSSTSSSNG QHEWSGRPID ANGASLSAGL GLGLPCDAGS GLKELMMGTP  480
SVFGPKHPTL DLLGLGMAAS VGPTPGLTAL ITSMGSNMDM VTSAGAFGSG DFSGKDLGRN  540
S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66730.1	1e-105	C2H2 family protein