PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT56696.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MIKC_MADS

Protein Properties

Length: 233aa MW: 27163.1 Da PI: 10.13

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT56696.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	90.1	1.1e-28	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++ rqvtfskRrng++KKA+EL +LCdaev +iifsstgklye+s+ PHT56696.1 10 RIDNSTSRQVTFSKRRNGLMKKAKELAILCDAEVGLIIFSSTGKLYEFSN 59 8***********************************************95 PP
2	K-box	75.7	1.2e-25	80	170	8	98
K-box 8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 ++ ++ + +q+e++ L+++++ Lq+++R+l+Ge+L L +keL +Le++Le sl+ iR+kK+++l+++i+el +k ++++en +L kk+ PHT56696.1 80 HNPLTELKLWQREAEILRQQLQDLQENHRQLMGEELRGLGVKELTNLENKLEMSLRGIRTKKEQILKDEIQELTRKGSMIHQENLELYKKV 170 456677899*******************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence
MGRGKIVIRR IDNSTSRQVT FSKRRNGLMK KAKELAILCD AEVGLIIFSS TGKLYEFSNT 60 SMRSVIERYN KTKDEHQQLH NPLTELKLWQ REAEILRQQL QDLQENHRQL MGEELRGLGV 120 KELTNLENKL EMSLRGIRTK KEQILKDEIQ ELTRKGSMIH QENLELYKKV NLIRQENAEL 180 YKKAYGTRDA TAINGTTNYP YRFTVSREVH APIHLQLSQP DPQNFETPAR VSN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37940.1	1e-105	MIKC_MADS family protein