PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT56731.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB

Protein Properties

Length: 345aa MW: 38243 Da PI: 8.5017

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT56731.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	64.7	1.7e-20	5	50	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEdell ++v+++G+++W++I++ ++ gR++k+c++rw + PHT56731.1 5 KGPWSPEEDELLQQLVQKHGPRNWSLISKSIP-GRSGKSCRLRWCNQ 50 79****************************.*********985 PP
2	Myb_DNA-binding	57.1	4.1e-18	59	101	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+eEde +++a++++G++ W+tIar ++ gRt++ +k++w++ PHT56731.1 59 AFTPEEDETIIRAHARFGNK-WATIARLLN-GRTDNAIKNHWNST 101 79****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence
MDRVKGPWSP EEDELLQQLV QKHGPRNWSL ISKSIPGRSG KSCRLRWCNQ LSPQVEHRAF 60 TPEEDETIIR AHARFGNKWA TIARLLNGRT DNAIKNHWNS TLKRKCCSLS ADEGKELADQ 120 IFENHQPPLK RSVSAGSAMP VSGFHFSPGS PSGSDSDSSL HVTSSSQSHV FKPIAKTGGI 180 FPPPSIDISS PSIDPPTSLS LSLPGADSAE LSSRSAESTQ SKNPFQLSLP PPVQVPPPPP 240 PPPPPPQPQS VTVVPFEQQD KVFVPFSQEL LRVMQEMIKT EVRNYMMGIE QKQQHPQQQH 300 YQQQQQFQQQ THQLPSGLGL GLCMQQASDG YRDRAANRMG ISKFD

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence

MDRVKGPWSP EEDELLQQLV QKHGPRNWSL ISKSIPGRSG KSCRLRWCNQ LSPQVEHRAF  60
TPEEDETIIR AHARFGNKWA TIARLLNGRT DNAIKNHWNS TLKRKCCSLS ADEGKELADQ  120
IFENHQPPLK RSVSAGSAMP VSGFHFSPGS PSGSDSDSSL HVTSSSQSHV FKPIAKTGGI  180
FPPPSIDISS PSIDPPTSLS LSLPGADSAE LSSRSAESTQ SKNPFQLSLP PPVQVPPPPP  240
PPPPPPQPQS VTVVPFEQQD KVFVPFSQEL LRVMQEMIKT EVRNYMMGIE QKQQHPQQQH  300
YQQQQQFQQQ THQLPSGLGL GLCMQQASDG YRDRAANRMG ISKFD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67300.1	6e-76	MYB family protein