PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT56762.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

LBD

Protein Properties

Length: 223aa MW: 24475.8 Da PI: 6.9826

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT56762.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	102.6	3.4e-32	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C++C+vlr++C+++C+l+p++ p++q +++ +v+k+FG++ ++++++a+pe++r+++++sl+yeA r+ +Pv+Gavg++++++++++q+++e+ PHT56762.1 2 SCNGCRVLRKGCSENCILRPCLqwietPEAQGHATVFVAKFFGRAGLMSFISAVPENQRPALFQSLLYEAAGRTVNPVNGAVGLLWTGNWHVCQAAVET 100 6***********************************************************************************************999 PP DUF260 95 all 97 +l+ PHT56762.1 101 VLR 103 876 PP

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence
MSCNGCRVLR KGCSENCILR PCLQWIETPE AQGHATVFVA KFFGRAGLMS FISAVPENQR 60 PALFQSLLYE AAGRTVNPVN GAVGLLWTGN WHVCQAAVET VLRGGALRPI SEFLGASLEI 120 DEVSECNNTF KLQDPSVNML QQKRRRSPEE TSMLTDLNLS LTAGFNQQVY NNSHTLPEKH 180 VRPGTPSMNS EESGTTSTCF QSVGVVIGDH YQGKEPKLLS LFN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67420.1	3e-80	LBD family protein