PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT56878.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GRAS
Protein Properties Length: 528aa    MW: 60064.9 Da    PI: 6.23
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT56878.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS344.71.6e-1051475273374
        GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
                 + Lle A+a+++++ +++q+l++ l+el+sp+gd+ q+la+yf++AL +r+++s++++y++l + ++++ + +++ + +  f+evsP+ +f+h++ N a
  PHT56878.1 147 DILLETARAIADKNSTRVQQLMWMLNELSSPYGDTEQKLASYFLQALFSRMTDSGERCYRTLLSASDKTCSFESTRKLVLKFQEVSPWTTFGHVASNGA 245
                 689**********************************************************97777775554444455555****************** PP

        GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg......skeeleetgerLakfAeelgvpfefnvlvak.rledlelee 193
                 I+ea+ege+++HiiD++ ++++QWp+Ll+aLa+R++++p+lR+T+v+s++s        ++ ++e+g+r++kfA+ +gvpf+fnv+++  +l++l++ +
  PHT56878.1 246 IMEALEGESKLHIIDLSNTYCTQWPTLLEALATRTDETPHLRLTTVVSASSAtggassVQKVMKEIGSRMEKFARLMGVPFKFNVIHHMgNLSELDIGA 344
                 ************************************************98889999988999***********************96656********* PP

        GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse....sFlerflealeyysalfdsleaklpreseerikvEre 288
                 L++k++Eala+n++  lh++     +  ++rd +++l+++l+P++v++ve+ead++ +    +F+++f e+l++  + f+sl+++++++s+er ++Er+
  PHT56878.1 345 LDIKEDEALAINCIGTLHSVT----PAGNRRDYLISLFRRLQPRIVTIVEEEADLDVGvdgfDFVKGFQECLKWIRVYFESLDESFSKTSNERLMLERQ 439
                 ********************8....778889*********************99865556669************************************ PP

        GRAS 289 llgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve....eesgslvlgWkdrpLvsvSaWr 374
                   gr+iv+++ac  +e+ er+et  kW++r++  GF pv++s+++ +++++llr++k +g+++      + + ++l Wk++p+v++SaW+
  PHT56878.1 440 -AGRSIVDLLACPPSESMERRETGVKWSNRMHGGGFIPVSYSDEVCDDVRALLRRYK-EGWSMGqcggGDAAGIFLSWKEQPVVWASAWK 527
                 .********************************************************.88888844445588889**************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    
MDTLFRLVTL QQQQQQQQIQ QQQSDQYSFN SSRTSSSSRS SNKQNTYNIY NYHPHHQDHQ  60
DEECFNFFMD EDDFSSSSSK HTNYPSHHYT HYQQQQQQIS NTPTPTTTSS TPTQQSHHHH  120
HYDHQFSPAR DLNLEFASSF SGKWATDILL ETARAIADKN STRVQQLMWM LNELSSPYGD  180
TEQKLASYFL QALFSRMTDS GERCYRTLLS ASDKTCSFES TRKLVLKFQE VSPWTTFGHV  240
ASNGAIMEAL EGESKLHIID LSNTYCTQWP TLLEALATRT DETPHLRLTT VVSASSATGG  300
ASSVQKVMKE IGSRMEKFAR LMGVPFKFNV IHHMGNLSEL DIGALDIKED EALAINCIGT  360
LHSVTPAGNR RDYLISLFRR LQPRIVTIVE EEADLDVGVD GFDFVKGFQE CLKWIRVYFE  420
SLDESFSKTS NERLMLERQA GRSIVDLLAC PPSESMERRE TGVKWSNRMH GGGFIPVSYS  480
DEVCDDVRAL LRRYKEGWSM GQCGGGDAAG IFLSWKEQPV VWASAWKP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.10.0GRAS family protein