PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT56933.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

LBD

Protein Properties

Length: 318aa MW: 35588.1 Da PI: 7.8973

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT56933.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	137.5	4.6e-43	13	112	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrrkC+++Cv+apyfp +qp+kfanvhk+FGasnv kll++l+ +reda++sl+yeAe r+rdPvyG+vg+i+ lq++l+q++ +l ++k+ PHT56933.1 13 PCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELNAAQREDAVNSLAYEAEYRLRDPVYGCVGLISLLQHKLKQVQDDLLAAKK 111 7********************************************************************************************999887 PP DUF260 100 e 100 e PHT56933.1 112 E 112 6 PP

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence
FFRNRRMSSS SSPCAACKFL RRKCTQECVF APYFPPDQPQ KFANVHKVFG ASNVAKLLNE 60 LNAAQREDAV NSLAYEAEYR LRDPVYGCVG LISLLQHKLK QVQDDLLAAK KELTNYIGPS 120 AMLPVNLQPP GFIPQHHMNV PSSSTMMPFN MNPILGMPTG VPQGGQLMIP DPQQQQQQTI 180 EAQQFAAALA AREQREQQEM LGNYEQQQQQ QQHPSQQHDI LRFHSGLDST SSVTATGFHQ 240 MSSPISPSLV LVGTPENPHN LFPPTGQHGH SYPSYQERQL QSQLLLQQQQ PPPQQPETPR 300 QQQRAKSQEE ARSTGPSC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	5e-68	LBD family protein