PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT56983.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB

Protein Properties

Length: 372aa MW: 42433.2 Da PI: 8.2036

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT56983.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	65.9	7.4e-21	18	65	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l ++vk++G g+W+++ar+ g++Rt+k+c++rw +yl PHT56983.1 18 KGPWTPEEDKILSEYVKLHGEGRWSSVARCAGLNRTGKSCRLRWVNYL 65 79********************************************97 PP
2	Myb_DNA-binding	50.6	4.6e-16	71	115	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg T++E+ +++++++++G++ W+tIar+++ gRt++++k++w+++ PHT56983.1 71 RGHITPQEEGIIIELHALWGNK-WSTIARYLP-GRTDNEIKNYWRTH 115 6778****************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence
MVAMMGWGAN SDQQGWRKGP WTPEEDKILS EYVKLHGEGR WSSVARCAGL NRTGKSCRLR 60 WVNYLRPGLK RGHITPQEEG IIIELHALWG NKWSTIARYL PGRTDNEIKN YWRTHFKKKE 120 KASGKQDKRK IIRQKNQPQP NCTIATIDKK LSPQAEEVVI MKSDDSNTYT NYYHKNIMDQ 180 DPVVELPPVT TCSDTSYAWT DTFLMDGLWG GLWNLDDHSL MQATNDKCKV ANIQNQPANC 240 TYATDYAVNL HNGDVSGIQI ISFQLTDLGN QWEGVNAIVL SWIMNSISKN LLGGIMYAFV 300 AKVVWDDLHE RFNKIDSART FNLHKKIDAI SQGNVSVSTY FSKLKDLREE FEALVPAPSC 360 DCDKSREFVL HL

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence

MVAMMGWGAN SDQQGWRKGP WTPEEDKILS EYVKLHGEGR WSSVARCAGL NRTGKSCRLR  60
WVNYLRPGLK RGHITPQEEG IIIELHALWG NKWSTIARYL PGRTDNEIKN YWRTHFKKKE  120
KASGKQDKRK IIRQKNQPQP NCTIATIDKK LSPQAEEVVI MKSDDSNTYT NYYHKNIMDQ  180
DPVVELPPVT TCSDTSYAWT DTFLMDGLWG GLWNLDDHSL MQATNDKCKV ANIQNQPANC  240
TYATDYAVNL HNGDVSGIQI ISFQLTDLGN QWEGVNAIVL SWIMNSISKN LLGGIMYAFV  300
AKVVWDDLHE RFNKIDSART FNLHKKIDAI SQGNVSVSTY FSKLKDLREE FEALVPAPSC  360
DCDKSREFVL HL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G30210.1	1e-76	MYB family protein