PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT57169.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C2H2
Protein Properties Length: 252aa    MW: 28607.4 Da    PI: 9.7537
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT57169.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.0003396118223
                 EETTTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                 +C+ C+++++++ +L  H +  H
  PHT57169.1  96 SCSVCSRVYPTSRLLSIHVSEaH 118
                 6*****************99877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    
MAMEFETQRE LGFPFWKPIR RRFGPDDPFF AYGNIQRELL AKQIALDLTE EEKQLVQNII  60
TDEEISNLFC PIIGCGARMK SLDDFEDHYA TRHTASCSVC SRVYPTSRLL SIHVSEAHDS  120
FFQAKAARGF PMYECLVEGC GVKLKSYKSR QQHLVDKHKF SASYEFFRKA RPSKKQRQKQ  180
ASNKTQTQET SSAMQVEEER IDNLVSAVSK LTTADSPSAI SFGRSRTRGL SFVPRAVNRQ  240
RGSVTSTGGT KK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174180KKQRQKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14140.11e-109C2H2 family protein