PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT57216.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family LBD
Protein Properties Length: 159aa    MW: 18337.8 Da    PI: 8.357
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT57216.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260125.52.5e-39111111100
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                 +CaaCk++rrkC+++Cvlapyfpa+qpkkf+n+h+lFG++n++++l++l++e+ + dam+s+++e+++r + PvyG+v+ i+ l+qql+ + ++l++++
  PHT57216.1  11 SCAACKYQRRKCTSQCVLAPYFPANQPKKFQNAHRLFGVRNIVRILEQLDDEDqKADAMKSIIFESDMREKFPVYGCVECIFYLRQQLQIALQQLQYVN 109
                 6************************************************666649*****************************************999 PP

      DUF260  99 ee 100
                 ++
  PHT57216.1 110 AQ 111
                 87 PP
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    
MRVKGVTSRV SCAACKYQRR KCTSQCVLAP YFPANQPKKF QNAHRLFGVR NIVRILEQLD  60
DEDQKADAMK SIIFESDMRE KFPVYGCVEC IFYLRQQLQI ALQQLQYVNA QLDIYRQQQQ  120
HSSESSVNNG RLSMLPFFSS TEAESISQGI TYSDFDVSN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47870.12e-38LBD family protein