PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT57273.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

HD-ZIP

Protein Properties

Length: 287aa MW: 32464.7 Da PI: 4.5643

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT57273.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	65.4	7.6e-21	66	119	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t+eq++ Le+ Fe ++++ e++++LA+klgL+ rqV vWFqNrRa++k PHT57273.1 66 KKRRLTPEQVHLLEKSFEAENKLEPERKTQLAQKLGLQPRQVAVWFQNRRARWK 119 5678*************************************************9 PP
2	HD-ZIP_I/II	135	2.6e-43	65	156	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekkrrl+ eqv+lLE+sFe+e+kLeperK++la++LglqprqvavWFqnrRAR+ktkqlE+dy++Lk++yd+l ++ ++++k++++L++e+ PHT57273.1 65 EKKRRLTPEQVHLLEKSFEAENKLEPERKTQLAQKLGLQPRQVAVWFQNRRARWKTKQLERDYDQLKSSYDSLLSDFDSIRKDNDQLKSEVV 156 69**************************************************************************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence
MGSGHIFFDP SSCHGNMLFL GNGDPLFRGP RSTMLKMEDS SKRRPFFSSP EELYDEEYYD 60 EQSPEKKRRL TPEQVHLLEK SFEAENKLEP ERKTQLAQKL GLQPRQVAVW FQNRRARWKT 120 KQLERDYDQL KSSYDSLLSD FDSIRKDNDQ LKSEVVSLME KLQGKVVGGS VVNEKSEALE 180 VDALTTLQVK VKTEDRLSSG SGGSAVVDEH SPQLVDSGDS YFHSTIDHEE YPGPGGCNIP 240 PPVDGLQSEE DDGSDDGSCH GYFSNVFVAS EEHHHEEGEE PLGWFWS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	114	122	RRARWKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	9e-81	HD-ZIP family protein