PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT57308.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

TCP

Protein Properties

Length: 278aa MW: 31049 Da PI: 10.2286

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT57308.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	125.6	5.1e-39	84	205	2	133
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaksaakskks 100 a+kkdrhski T++g RdRRvRls+ +a++fFdLqd+LGfdk+skt++WL++++k a+ el + + s+ + +++s+ ++ + + PHT57308.1 84 AVKKDRHSKILTSQGHRDRRVRLSIGVARKFFDLQDMLGFDKPSKTLDWLFTKSKLAMEELIDAKKSATPSP-TNNSECDED-------IV--VVPAAP 172 89***********************************************************944444222.111111111.......11..123333 PP TCP 101 qksaasalnlakesrakarararertrekmrik 133 ++ ++ +l +esrakarararert +k ++ PHT57308.1 173 ADELTKRAKLERESRAKARARARERTMKKIWTQ 205 344444568999*************997665 PP

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence
MFPFGNSSNG NPTLHSSVPP SSFHSSNSSI FGLNGNQMLF HQHDLDHHLP YLPSNGHLID 60 NNSPVMFATN NVISSNKSNK NKKAVKKDRH SKILTSQGHR DRRVRLSIGV ARKFFDLQDM 120 LGFDKPSKTL DWLFTKSKLA MEELIDAKKS ATPSPTNNSE CDEDIVVVPA APADELTKRA 180 KLERESRAKA RARARERTMK KIWTQIEAKS VLVKEQTKME QIMNLSGPNR EAATSRYNNC 240 TRNWDHDNVN PTIMSSMAAA TICCTSSSQG HTESAQKV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67260.2	1e-26	TCP family protein