PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT57333.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

Protein Properties

Length: 321aa MW: 37229.2 Da PI: 7.5009

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT57333.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	48.1	2.2e-15	7	99	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 ffk++ ++ ++rl++pk+f+++++++++ l+ +sg++ v++ +++ + +v+ +GW+ Fvk+++L++ D +vFk+dg s+f v++f+ PHT57333.1 7 FFKIM---MNDFRSRLRIPKRFVTSFKNSNKLLGRKFLTGPSGKTCLVEV--KRTEEDdFVFCNGWEIFVKDHHLDDADLLVFKMDGFSGF--DVTIFDP 99 77888...4556678*********55555555778899******..5555555***********************9887999..9998875 PP
2	B3	51.3	2.1e-16	218	294	5	85
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 + ++ + +g+l +p+ a+eh+ +k e t+tl+ ++gr+W + r + ++ v+++GW++Fv +n+L+e D++vF+l PHT57333.1 218 M-KPTHVYNGQLKFPRAWAQEHMRQKSE--TITLRIpSTGRTWPASI--RCRMEGLVIQSGWEDFVMDNRLDEFDVCVFELA 294 3.445555678*********988555..7777775689***..899999***********************75 PP

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence
MDKNKSFFKI MMNDFRSRLR IPKRFVTSFK NSNKLLGRKF LTGPSGKTCL VEVKRTEEDD 60 FVFCNGWEIF VKDHHLDDAD LLVFKMDGFS GFDVTIFDPS ACEKEEPSSE DDPSCEEINY 120 GYDDDDDTTD EEDNMQEVTS RKSSHGKQYQ FHSPQPSKGR KKKKILVAKE DNKKRKCTPE 180 ENRCSYSNRR QVPEKEKMRV HQQASRHTSS VPCVLMKMKP THVYNGQLKF PRAWAQEHMR 240 QKSETITLRI PSTGRTWPAS IRCRMEGLVI QSGWEDFVMD NRLDEFDVCV FELALGGTHN 300 SIPVILDVHI YPVKNEIIGP L

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	160	176	RKKKKILVAKEDNKKRK
2	161	177	RKKKKILVAKEDNKKRK
3	162	178	RKKKKILVAKEDNKKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G33280.1	2e-20	B3 family protein