PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT57363.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB

Protein Properties

Length: 255aa MW: 29333 Da PI: 6.3071

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT57363.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	45	2.4e-14	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd +lv+ + G +W+t+++ g+ R++k+c++rw +yl PHT57363.1 14 RGPWTIEEDHKLVHFILSNGIQCWRTVPKLAGLQRCGKSCRLRWINYL 61 89********************************************97 PP
2	Myb_DNA-binding	51.9	1.8e-16	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ ++ E++++++++++lG++ W++Ia++++ gRt++++k++w++ PHT57363.1 67 RGALSEAEEDQIIQLHARLGNR-WSKIASYFP-GRTDNEIKNHWNT 110 78889***************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence
MGRQPCCDRV GLKRGPWTIE EDHKLVHFIL SNGIQCWRTV PKLAGLQRCG KSCRLRWINY 60 LRPDLKRGAL SEAEEDQIIQ LHARLGNRWS KIASYFPGRT DNEIKNHWNT RIKKRLQLMG 120 IDPLTHQPID MEKYQHEPDQ TEKCDKRNEP ENFIENTNDV SLPNNPHHNM LSDSFNVDLL 180 NKSGNTMSTC YSPSISLEAE ESINLSTTTS AATESSSNVA ALTEEQDSLQ QWMDSIFSCA 240 VNQLEEDLIF LRKYN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G14340.1	1e-80	MYB family protein