PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT57454.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C2H2

Protein Properties

Length: 795aa MW: 88719.5 Da PI: 6.6871

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT57454.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.7	0.00019	120	140	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ Cgk F + L H+rtH PHT57454.1 120 CKECGKEFFSMKALAGHLRTH 140 ********************9 PP
2	zf-C2H2	16.1	3.3e-05	149	171	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++Cgk F + L H+++H PHT57454.1 149 HICEKCGKGFASMRALFGHMKVH 171 68*******************99 PP
3	zf-C2H2	10.7	0.0017	378	400	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kCp C k+F++ +L H r H PHT57454.1 378 HKCPVCFKVFPSGQSLGGHKRAH 400 79**************9999988 PP

Sequence ? help Back to Top
Protein Sequence Length: 795 aa Download sequence
MDETQEQKYI CKFCNKCCDS GKSLGGHMRG HLALISAAKK QKDNSKVGSE EEEEEEAANI 60 HEDLSISEQS ESSTSQEKEN NVSIGDDGDD SIGYGLRENP RRSWRVSDFK NCSLEMKNLC 120 KECGKEFFSM KALAGHLRTH SKKGIERCHI CEKCGKGFAS MRALFGHMKV HSKRSRVDDQ 180 DSELSKQSLS DFDNICPIRK KRSKIKYKID VNSSFSGVKE SSSAISEVDE VEEAARCLLM 240 LSVGVRDWDE YISVLENSKN ENVILESESS FHCAKRISAG DAFTVKHLSH AVFSDSGCVY 300 DYEKNYKIAE FSDELMLVNT EITKVCYSTD MQFENDPSSS VVMEDFPSLN SCPLKNAGVD 360 FHPETNLLVS EPVKSKKHKC PVCFKVFPSG QSLGGHKRAH YTGFTESKTK EPMVKKLDDL 420 ADNHKAFDLN TPVNAVDVGE NDVELKLCIV TSLLRRIAAL ESSLRRTSSP PRTRQTLRDA 480 AARTIQTHFR AFLARRSRIL RLLKQLASIK TTLYVLKSLV SGKTHFDARA VKHKALDLLV 540 RLDSIEGDDP LIRDGKRSIS NELARFVKAI NGVTIISSRV VKNVGGGYKA RVFSGDRKIE 600 FDTNRSEAID KFVASVNESE DEEEEEEDQQ NTGLSDTEKS GILLTRCGGL AGSHGGVKPK 660 RKKSVTFAEN GGAYRVFHSS PEPASVGNVH EQESFDDEIE LIKNLNKRVE KLGMASKDCQ 720 VAEQEDSESS GSSDNERDPN QISRKDGYYE RNVRDENDNE IENESFLFSA PLPVKMEGRA 780 ADHINRKKGV KIVGN

Sequence ? help Back to Top

Protein Sequence Length: 795 aa Download sequence

MDETQEQKYI CKFCNKCCDS GKSLGGHMRG HLALISAAKK QKDNSKVGSE EEEEEEAANI  60
HEDLSISEQS ESSTSQEKEN NVSIGDDGDD SIGYGLRENP RRSWRVSDFK NCSLEMKNLC  120
KECGKEFFSM KALAGHLRTH SKKGIERCHI CEKCGKGFAS MRALFGHMKV HSKRSRVDDQ  180
DSELSKQSLS DFDNICPIRK KRSKIKYKID VNSSFSGVKE SSSAISEVDE VEEAARCLLM  240
LSVGVRDWDE YISVLENSKN ENVILESESS FHCAKRISAG DAFTVKHLSH AVFSDSGCVY  300
DYEKNYKIAE FSDELMLVNT EITKVCYSTD MQFENDPSSS VVMEDFPSLN SCPLKNAGVD  360
FHPETNLLVS EPVKSKKHKC PVCFKVFPSG QSLGGHKRAH YTGFTESKTK EPMVKKLDDL  420
ADNHKAFDLN TPVNAVDVGE NDVELKLCIV TSLLRRIAAL ESSLRRTSSP PRTRQTLRDA  480
AARTIQTHFR AFLARRSRIL RLLKQLASIK TTLYVLKSLV SGKTHFDARA VKHKALDLLV  540
RLDSIEGDDP LIRDGKRSIS NELARFVKAI NGVTIISSRV VKNVGGGYKA RVFSGDRKIE  600
FDTNRSEAID KFVASVNESE DEEEEEEDQQ NTGLSDTEKS GILLTRCGGL AGSHGGVKPK  660
RKKSVTFAEN GGAYRVFHSS PEPASVGNVH EQESFDDEIE LIKNLNKRVE KLGMASKDCQ  720
VAEQEDSESS GSSDNERDPN QISRKDGYYE RNVRDENDNE IENESFLFSA PLPVKMEGRA  780
ADHINRKKGV KIVGN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26590.1	4e-16	C2H2 family protein