PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT57466.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GRAS
Protein Properties Length: 703aa    MW: 77526.9 Da    PI: 5.4483
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT57466.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS437.97.5e-1343387021374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaalklfsevsPilkfshlt 97 
                 lv+lLl+cAeavs++d  la+++L +l+  ++p gd+mqR+a++fteAL+arla +  +  ++ +p++ ++    s e l++++++++++P++kf+h+t
  PHT57466.1 338 LVHLLLACAEAVSKEDYMLARRYLHHLNRVVTPIGDSMQRVASCFTEALSARLAATLATKPSTSNPKPFNPFPpnSLEILKIYQILYQACPYVKFAHFT 436
                 68****************************************************965555555555555433244************************ PP

        GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                 aNqaI ea+e eervH+iD+di qG QWpa++qaLa+Rp+g+p lRiTgvg+    s e+++etg+ L+++A++l+vpfef++ v ++ledl++++++ 
  PHT57466.1 437 ANQAIFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGP----SPEAVRETGRCLTELAHSLHVPFEFHP-VGEQLEDLKPHMFNR 530
                 ****************************************************....9**************************.7************** PP

        GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
                 + gEalaVn+v +lhr++        ++ ++L ++++  P++v++veqea+hn++ Fl rfleal+yysa+fdsl+a++p +s++r+k+E+ ++g+ei+
  PHT57466.1 531 RIGEALAVNSVNRLHRVP--GN----CIGNLLAMIRDQAPNIVTIVEQEASHNGPYFLGRFLEALHYYSAIFDSLDATFPGDSSQRAKLEQYIFGPEIM 623
                 *****************9..33....4446********************************************************************* PP

        GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 n+v+ceg+er+ rhe+lekWr+ +e  GFk v+ls +a++q k ll  ++ dgy++ e++g+l+lgW+dr+++++SaWr
  PHT57466.1 624 NIVSCEGTERVVRHERLEKWRRVMEGKGFKGVALSANAVTQSKILLGLYSCDGYKLTEDNGCLLLGWQDRAILAASAWR 702
                 ******************************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 703 aa     Download sequence    
MSVMSNTLCG SMGSLKNDIK SEVGSLKSEN SYSKLLPDDS LASSESKKVT PVSSDFELNG  60
SSLAPNQVDD DVEIQSPDNS IWESFFADQL EGDFMISSPI RNLPSPQPAS SFSTATAHSN  120
NNNNNNNNNY YNAYAHHQGI HGQSMMMCSP PRSPLGPNNY NSSNKGKGLS PLQKVFNSPN  180
NQFMQIESFN LPALESFLDD DYDKEDLASS YSTLKVSGGG VAGSASESFD ALSVIPDFLE  240
CLALPNSSSN TSGSFVGSLL SNTFSSQLLN QDDEIFQTGS IAPLSQQLHQ ERQHEKQQKQ  300
RPTYVQPPST QQQQHTQIFN HNLIVAASDQ EQDSGLQLVH LLLACAEAVS KEDYMLARRY  360
LHHLNRVVTP IGDSMQRVAS CFTEALSARL AATLATKPST SNPKPFNPFP PNSLEILKIY  420
QILYQACPYV KFAHFTANQA IFEAFEAEER VHVIDLDILQ GYQWPAFMQA LAARPGGAPF  480
LRITGVGPSP EAVRETGRCL TELAHSLHVP FEFHPVGEQL EDLKPHMFNR RIGEALAVNS  540
VNRLHRVPGN CIGNLLAMIR DQAPNIVTIV EQEASHNGPY FLGRFLEALH YYSAIFDSLD  600
ATFPGDSSQR AKLEQYIFGP EIMNIVSCEG TERVVRHERL EKWRRVMEGK GFKGVALSAN  660
AVTQSKILLG LYSCDGYKLT EDNGCLLLGW QDRAILAASA WRC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.13e-97GRAS family protein