PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT57471.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

TCP

Protein Properties

Length: 392aa MW: 43279.1 Da PI: 8.2388

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT57471.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	121.6	8.8e-38	55	128	2	74
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.e 74 a+k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlqqa+p+i+++tg+++++as+ PHT57471.1 55 APKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGNGTIPASALaA 128 789***************************************************************99977641 PP

Sequence ? help Back to Top
Protein Sequence Length: 392 aa Download sequence
MDPKDSKQPQ QEISNLSSHP ETNNINTSSN MNPAEIKDFQ IGIAEKDEAK KQQLAPKRSS 60 NKDRHTKVEG RGRRIRMPAL CAARIFQLTR ELGHKSDGET IQWLLQQAEP SIIAATGNGT 120 IPASALAAAG PCVSQQGISV SVGLQQKMGE LGASISSGSS SRTIWPMVGG NFGRPHLATT 180 GIWPPSAPDV TTFGHNLGTE SSNCLQKISF PGFDLPSTNL NPMSFTSMLG ATNPQQLPGL 240 ELGLSQEGPI GVMNSQSLNQ FYQQMGHSRM HHHSQPQNQH QQPSPEDGTF LLQLCDLKDE 300 KSVIHAVVFW LKGAMTCYGF LPLMLKTQID LSTFNMVRFC EFRPRVRVRC IYVDMQESMI 360 NSRISWHDKD HVNGNCKIFK SVKAWKEDAV NE

Sequence ? help Back to Top

Protein Sequence Length: 392 aa Download sequence

MDPKDSKQPQ QEISNLSSHP ETNNINTSSN MNPAEIKDFQ IGIAEKDEAK KQQLAPKRSS  60
NKDRHTKVEG RGRRIRMPAL CAARIFQLTR ELGHKSDGET IQWLLQQAEP SIIAATGNGT  120
IPASALAAAG PCVSQQGISV SVGLQQKMGE LGASISSGSS SRTIWPMVGG NFGRPHLATT  180
GIWPPSAPDV TTFGHNLGTE SSNCLQKISF PGFDLPSTNL NPMSFTSMLG ATNPQQLPGL  240
ELGLSQEGPI GVMNSQSLNQ FYQQMGHSRM HHHSQPQNQH QQPSPEDGTF LLQLCDLKDE  300
KSVIHAVVFW LKGAMTCYGF LPLMLKTQID LSTFNMVRFC EFRPRVRVRC IYVDMQESMI  360
NSRISWHDKD HVNGNCKIFK SVKAWKEDAV NE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27010.1	2e-67	TCP family protein