PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT57795.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MYB
Protein Properties Length: 260aa    MW: 29666.8 Da    PI: 8.6128
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT57795.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.76.4e-141461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W+  Ed ll ++++q+G g+W++ +   g+ R++k+c++rw +yl
       PHT57795.1 14 KGPWSSLEDSLLTNYINQHGEGHWRSLPLNAGLLRCGKSCRLRWVNYL 61
                     79******************************99************97 PP
2Myb_DNA-binding50.93.5e-1667112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++ ++Ed+l+v+++ +lG++ W++Ia +++ gRt++++k++w+++l
       PHT57795.1  67 RGNFCEDEDDLIVRLHSLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 112
                      78999*****************.*********.************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    
MGRAPCCAKE GLRKGPWSSL EDSLLTNYIN QHGEGHWRSL PLNAGLLRCG KSCRLRWVNY  60
LRPGIKRGNF CEDEDDLIVR LHSLLGNRWS LIAGRLPGRT DNEIKNYWNT HLVKKLKNAG  120
IDPKPLKNFP RRKKTHKEGK KCKSQNSKGQ SVQVEKIKVF APKPIRISCV NSRDNSFEND  180
TLSTSTCSSN SNFEEVDAGK EKENEVNFLA RDLDFGELLK GDEFCDEFLM GESCNFSKCL  240
FSLDDNMVEK VYQEYLLLLS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1131158RRKKTHKEGKKCKSQNSKGQSVQVEKIK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16720.19e-65MYB family protein