PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT57806.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

Nin-like

Protein Properties

Length: 383aa MW: 41669.5 Da PI: 7.4586

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT57806.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	85.1	6.4e-27	192	243	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isle+l++yF+ ++kdAAk+Lgvc+ ++K iCRq+GI+RWP+Rki+++ PHT57806.1 192 AEKTISLEVLQQYFAESVKDAAKSLGVCPITMKHICRQHGISRWPSRKINKV 243 589***********************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 383 aa Download sequence
MTTAYVVQWK STFCKTNRCK RGPLDTFPIH GLWPANATGH SIMCPQGAES DVDTLMNGDQ 60 KLETDLKAIW PNLVAAGNGK DKTETLTNIL CYLVFCALVR VLFDAWDIQL SAGVDSTTLT 120 STCVVTKKFL SPSSVANRRT RPDLMEEQQS PVALNGAKGA EGVNATAEAH NHASFSENKQ 180 TGKKSERKRG EAEKTISLEV LQQYFAESVK DAAKSLGVCP ITMKHICRQH GISRWPSRKI 240 NKVNQSVSKL KLVIESVQGA XKSLGGMTDS PCKASEYYEE KNEFSNHGTP ASHEEAEPSN 300 QMLGSRIIGN EELSPKQNGF VREGSHRSRT GSFSREESTG TPTSHGSCQG SPCPANESSP 360 QNELVNSPTQ ESVMKVEGSL EPT

Sequence ? help Back to Top

Protein Sequence Length: 383 aa Download sequence

MTTAYVVQWK STFCKTNRCK RGPLDTFPIH GLWPANATGH SIMCPQGAES DVDTLMNGDQ  60
KLETDLKAIW PNLVAAGNGK DKTETLTNIL CYLVFCALVR VLFDAWDIQL SAGVDSTTLT  120
STCVVTKKFL SPSSVANRRT RPDLMEEQQS PVALNGAKGA EGVNATAEAH NHASFSENKQ  180
TGKKSERKRG EAEKTISLEV LQQYFAESVK DAAKSLGVCP ITMKHICRQH GISRWPSRKI  240
NKVNQSVSKL KLVIESVQGA XKSLGGMTDS PCKASEYYEE KNEFSNHGTP ASHEEAEPSN  300
QMLGSRIIGN EELSPKQNGF VREGSHRSRT GSFSREESTG TPTSHGSCQG SPCPANESSP  360
QNELVNSPTQ ESVMKVEGSL EPT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	1e-38	Nin-like family protein