PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT57968.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB

Protein Properties

Length: 634aa MW: 70831.9 Da PI: 9.5165

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT57968.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.6	1e-16	58	101	4	48
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT+eEd ll ++vk++ g++Wk Ia+ ++ gRt+ qc +rwqk+l PHT57968.1 58 WTAEEDNLLTEVVKRFKGRNWKGIAEFLN-GRTDVQCLHRWQKVL 101 ***************************.**********986 PP
2	Myb_DNA-binding	58.4	1.6e-18	107	153	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++++++v+++G + W+ Ia+ ++ gR +kqc++rw+++l PHT57968.1 107 KGPWTKEEDDQIIELVEKFGCKKWSIIAKSLP-GRIGKQCRERWHNHL 153 79****************************.***********97 PP
3	Myb_DNA-binding	49.9	7.3e-16	159	202	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r++WT++Ed l +++ +G++ W+ Iar ++ gRt++ +k++w++ PHT57968.1 159 RDAWTEQEDSVLCLYHQIYGNK-WAEIARFLP-GRTDNAVKNHWNS 202 789*****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 634 aa Download sequence
IMIQVKEEAL TLEFGGFTSC SSFSDSSYEA STPRCSSEPG SSCQRSLGQT KRSSQAGWTA 60 EEDNLLTEVV KRFKGRNWKG IAEFLNGRTD VQCLHRWQKV LNPELVKGPW TKEEDDQIIE 120 LVEKFGCKKW SIIAKSLPGR IGKQCRERWH NHLDPTIKRD AWTEQEDSVL CLYHQIYGNK 180 WAEIARFLPG RTDNAVKNHW NSTVKKRSNL NLLSRLGPDI QSEGSPDFSS HKKKLEIKKH 240 LAQAHNAETL CLSKQTGVDN AADACSTDLR IGCACSPRND LHKGTSLFGA CKSSEKNARD 300 LIKPLSGIQF GKAEILPNGE TDQSNLNLTK ISDPLLTSLD FPLDPSRKTR WSSSQVKAVH 360 PTTFGRMYES PKRSKYSTVN DTDHDFLTLS LAGFTEVHSQ GNKKNKAYDI QSSLALKQPG 420 FTEVHSKDNK KNKAYDTQSS LVLKRPDFTK IHSRGYKKNK AYYTQSSLAH KQPGFLNYEP 480 PKVKDLTIPL TDENLSRDNI IGRQNSHLLC STPLSLTVSA NSSSPESVLR NSAMSYTKTP 540 SIIRKKTSRF SEASGHYSCT GTTTPMHFLR SVLDREDTSN LKDRISGCKR SVSGKSLGRR 600 LEYAFDMEWD SSRCCTPVSA ASPCAIGANT MLTP

Sequence ? help Back to Top

Protein Sequence Length: 634 aa Download sequence

IMIQVKEEAL TLEFGGFTSC SSFSDSSYEA STPRCSSEPG SSCQRSLGQT KRSSQAGWTA  60
EEDNLLTEVV KRFKGRNWKG IAEFLNGRTD VQCLHRWQKV LNPELVKGPW TKEEDDQIIE  120
LVEKFGCKKW SIIAKSLPGR IGKQCRERWH NHLDPTIKRD AWTEQEDSVL CLYHQIYGNK  180
WAEIARFLPG RTDNAVKNHW NSTVKKRSNL NLLSRLGPDI QSEGSPDFSS HKKKLEIKKH  240
LAQAHNAETL CLSKQTGVDN AADACSTDLR IGCACSPRND LHKGTSLFGA CKSSEKNARD  300
LIKPLSGIQF GKAEILPNGE TDQSNLNLTK ISDPLLTSLD FPLDPSRKTR WSSSQVKAVH  360
PTTFGRMYES PKRSKYSTVN DTDHDFLTLS LAGFTEVHSQ GNKKNKAYDI QSSLALKQPG  420
FTEVHSKDNK KNKAYDTQSS LVLKRPDFTK IHSRGYKKNK AYYTQSSLAH KQPGFLNYEP  480
PKVKDLTIPL TDENLSRDNI IGRQNSHLLC STPLSLTVSA NSSSPESVLR NSAMSYTKTP  540
SIIRKKTSRF SEASGHYSCT GTTTPMHFLR SVLDREDTSN LKDRISGCKR SVSGKSLGRR  600
LEYAFDMEWD SSRCCTPVSA ASPCAIGANT MLTP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	369	374	ESPKRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11510.2	1e-80	MYB family protein