PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT58134.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family YABBY
Protein Properties Length: 195aa    MW: 21948.9 Da    PI: 8.4106
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT58134.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY218.12.7e-67171806170
       YABBY   6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsen 104
                  seq+Cyv+Cn C+t+lavsvP tslfk+vtvrCGhC++ll   l  +++     +h+++s+  + ++ l+  ++++    +++ ++ ++       + 
  PHT58134.1  17 PSEQLCYVHCNNCDTVLAVSVPCTSLFKTVTVRCGHCANLLPGWLLPSTNHHHQLHHFGHSYFSPSHNLLEEISNATPNFLMNQGNSAHDFVLP--ARP 113
                 69****************************************9999999999999999999887755555444444444444444433333332..356 PP

       YABBY 105 edeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                   +++pr+pp ++rPPekrqrvPsaynrfikeeiqrika+nPdishreafsaaaknWahfP+i fgl
  PHT58134.1 114 GFDDLPRPPPvINRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFPHIQFGL 180
                 6789999999789****************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    
MSSSNSLSLD HLPLPPPSEQ LCYVHCNNCD TVLAVSVPCT SLFKTVTVRC GHCANLLPGW  60
LLPSTNHHHQ LHHFGHSYFS PSHNLLEEIS NATPNFLMNQ GNSAHDFVLP ARPGFDDLPR  120
PPPVINRPPE KRQRVPSAYN RFIKEEIQRI KAGNPDISHR EAFSAAAKNW AHFPHIQFGL  180
MTDQTVKRTN VRQQV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00180.14e-59YABBY family protein