PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT58163.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 126aa    MW: 14472.7 Da    PI: 7.6743
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT58163.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF391e-12250149
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                k ie+k  r++ fskR+ng+ KKA+E S L++ +v  i+f +  k + y
  PHT58163.1  2 KLIESKEARTIAFSKRKNGLGKKAKEYSNLTGEDVGFILFTQAEKPHSY 50
                569*************************************998887666 PP
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    
MKLIESKEAR TIAFSKRKNG LGKKAKEYSN LTGEDVGFIL FTQAEKPHSY GPPSIEKIFV  60
KIQAFKEENL DSEMPTDKHM LENRLKQFEA YKLRLDKIKS EIKGDVPAEQ FKFISEVALD  120
LEEMSS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.12e-12M-type_MADS family protein