PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT58164.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 157aa    MW: 18026.5 Da    PI: 7.0941
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT58164.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF37.14.1e-12450349
                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                ie+k  r+v fskR+n + KKA+  S L++a+v  i+f + gk + y
  PHT58164.1  4 IESKEARTVAFSKRKNDLGKKAKDYSNLTGADVGFILFTQAGKPHSY 50
                9*****************************************98887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    
MNLIESKEAR TVAFSKRKND LGKKAKDYSN LTGADVGFIL FTQAGKPHSY GSPSIKKIID  60
KFHELKQNDS QQNHTDMSKT NVFEAFEDLR KEVQAFKEKD LGSELPTDKH MLENKLKHFE  120
AYKLWLDKIK NEIKGDVPAE QFKFISEVAL DLEEMSS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.13e-14M-type_MADS family protein