PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT58193.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

M-type_MADS

Protein Properties

Length: 170aa MW: 19695.5 Da PI: 9.6788

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT58193.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	40.3	3.9e-13	15	63	1	49
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k ie+k r+v fskR+ng+ KKA+E S L++ +v i+f + k + y PHT58193.1 15 KLIESKEARTVAFSKRKNGLGKKAKEYSNLTGEDVGFILFTKAEKPHSY 63 569*************************************998887766 PP

Sequence ? help Back to Top
Protein Sequence Length: 170 aa Download sequence
MDKRGGKGRQ KIEMKLIESK EARTVAFSKR KNGLGKKAKE YSNLTGEDVG FILFTKAEKP 60 HSYGSPSIEK VIDKFHELKQ NDSLQNHADM SKINVFEAFE DLRKEVQAFK EKYLDSKMSI 120 DKHTLENRLK QFEEYKSRLD KIKKEIKGDV PGEQFKLISE FALDLEEMSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24840.1	2e-19	M-type_MADS family protein