PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT58194.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

M-type_MADS

Protein Properties

Length: 156aa MW: 17854.2 Da PI: 8.8639

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT58194.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	33.2	6.9e-11	2	46	1	45
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 k ie+k r+v fsk +ng+ KKA+E S L+ +v i+f + gk PHT58194.1 2 KLIESKEARTVAFSKGKNGLGKKAKEYSNLTREDVGFILFTQAGK 46 569*************************************99997 PP

Sequence ? help Back to Top
Protein Sequence Length: 156 aa Download sequence
MKLIESKEAR TVAFSKGKNG LGKKAKEYSN LTREDVGFIL FTQAGKPHSN GSPSIEKVID 60 KFHELKKNDS LQNHSDMSKT NVFEAFEDLR KEVQAFKEKA PDSEMPTDKH MLENRLKHFE 120 AYKSRLDKIK KERKGDVPAE QFGISEVTFD LEEMSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24840.1	7e-12	M-type_MADS family protein