PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT58195.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 170aa    MW: 19655.5 Da    PI: 10.0543
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT58195.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF39.85.8e-131563149
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                k ie+k  r+v fskR+ng+ KKA+E S L++a+   i+f +  k + y
  PHT58195.1 15 KLIESKEARTVAFSKRKNGLGKKAKEYSNLTGADTGFILFTQAEKPHSY 63
                569***********************************99998887766 PP
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    
MDKRGGKGRQ KIEIKLIESK EARTVAFSKR KNGLGKKAKE YSNLTGADTG FILFTQAEKP  60
HSYGSPSIEK VIDKFHELKQ NDSLQNHTNM RKINVFEAFE DLRKEVQAFK EKYLDLKISI  120
DKHTLENRLK QFEAYKSRLD KIKKEIKGDV PGEQFKFISE VALDLEEMSS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.13e-19M-type_MADS family protein