PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT58196.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

M-type_MADS

Protein Properties

Length: 229aa MW: 25543.9 Da PI: 8.6615

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT58196.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	47.2	2.8e-15	17	63	3	49
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 ie+k r+vtfskR+ng+ KKA+E S L++ +v +i+f + gk + y PHT58196.1 17 IESKEARTVTFSKRKNGLGKKAKEYSNLTGEDVGLILFTQAGKPHSY 63 9*****************************************98887 PP

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence
MDKRGGKGRQ KIEMNLIESK EARTVTFSKR KNGLGKKAKE YSNLTGEDVG LILFTQAGKP 60 HSYGSPSIEK VIDKLHELKQ NDSLQNHIDM SKTNVFEVLR LNLGVLISSR FPPVRSAEFS 120 DNIVLKRIET ESSPSKGTSE ATRLHPPHYE LALQALSQSG AEYDEHGEKE CSKRDDADAN 180 SPSTEELVKA FSIDRYPIRM QCDGAADLTG VFVVKTIKTV HQRTDSRII

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24840.1	2e-17	M-type_MADS family protein