PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT58197.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

M-type_MADS

Protein Properties

Length: 257aa MW: 29506.3 Da PI: 8.4703

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT58197.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	39.7	6.2e-13	4	50	3	49
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 ie+k r+v fskR+ng+ KKAeE S L++ +v i++ + gk + y PHT58197.1 4 IESKEARTVAFSKRKNGLGKKAEEYSNLTGEDVGFILLTQAGKPHSY 50 9*****************************************98887 PP

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence
MMLIESKEAR TVAFSKRKNG LGKKAEEYSN LTGEDVGFIL LTQAGKPHSY GSPSIEKVID 60 KFHELKQNDS LQNHTDMSKT NVFDAFEDLR KEVQEFKEKY LDSKMSIDKH TLENRNADRC 120 SRTNFGFFIA RLNHVSVTKI VGRHNLDASR RPSRRQIIFH LLQCNFSELI RPQRGALVIA 180 LTPSTRHVAE YDEHGEKEYF KRDDADANSP SIEELVKAFS IDRYPVRMQC DGAADLTVDF 240 VVKTINTVHQ RTDSRII

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24840.1	5e-14	M-type_MADS family protein