PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT58203.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 169aa    MW: 19293.9 Da    PI: 9.5738
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT58203.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF40.92.7e-131559145
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                k ie+k  r+v fskR+ng+ KKA+E S L++ +v  i+f + gk
  PHT58203.1 15 KLIESKEARTVAFSKRKNGLGKKAKEYSNLTGEDVGFILFTQAGK 59
                569*************************************99997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    
MDKRGGKGRQ KIEMKLIESK EARTVAFSKR KNGLGKKAKE YSNLTGEDVG FILFTQAGKP  60
HSNGSPSIEK VINKFYELKQ NDSLQNHTDM SKTNVFEAFE DLRKEVQAFK EKALDSEMPT  120
DKHMLENRLK QFEAYKSRLD KIKKEIKGDV PAEQFGISEV AFDLEELSS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-17M-type_MADS family protein