PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT58860.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 317aa    MW: 36001.3 Da    PI: 7.3395
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT58860.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF42.21.1e-131050242
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                +ien   r+ ++ kR++g +KKA+EL +LC++e a ii s+
  PHT58860.1 10 FIENINERKSSYKKRLKGFIKKAHELETLCNVEMAAIICSP 50
                8*************************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    
MGRKKVKLAF IENINERKSS YKKRLKGFIK KAHELETLCN VEMAAIICSP YHIEPKVIPN  60
NDVAISTFTK FRELPDFKQS KNMVTQKKFT EERKVKLEEQ LRKIRKENRV KDLTNKMYEM  120
LNGKDTQVCM SLNNLNDLYY VINENIKKVS EMMKGQGGGE SSTSNYQQPT IGPMVPSGSI  180
FEGPRDPLLY PTGTPVLVVP LVDPLIIPSR DNFERPRAPL LDSDVASMEM IPSEASSLVP  240
LAYTSQVPQP QINPSMSLPL MDASVPMNNN ENYSVGFPTS PPLSEMLDWN DDIVTLLEDP  300
YFNNISFQDR RNGNNNF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1326RKKVKLAFIENINERKSSYKKRLK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-30M-type_MADS family protein