PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT58861.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

M-type_MADS

Protein Properties

Length: 423aa MW: 47815 Da PI: 9.245

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT58861.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	41.6	1.6e-13	10	50	2	42
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 +ien r+ ++ kR++g +KKA+EL +LC++e a ii s+ PHT58861.1 10 FIENINERKSSYKKRLKGFIKKAHELETLCNVEMAAIICSP 50 8*************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 423 aa Download sequence
MGRKKVKLAF IENINERKSS YKKRLKGFIK KAHELETLCN VEMAAIICSP YHIEPKVIPN 60 NDVAISTFTK FRELPDFKQS KNMVTQKKFT EERKVKLEEQ LRKIRKENRV KDLTNKMYEM 120 LNGKDTQVCM SLNNLNDLYY VINENIKKVS EMMKGQGGGE SSTSNYQQPT IGPMVPSGSI 180 FEGPRDPLLY PTGTPVLVVP LVDPLIIPSR DNFERPRAPL LDSDVASMEM IPSEASSLVP 240 LAYTSQVSQP QINPSMSLPL MDASVPMNNN ENYSVGFPTS PPLSEMLDWN DDIIKPARRI 300 KTRGNFYVPP KDNMDRVRLA HRVQTWSRVA TSNRCQGVIL VPANLSLGRD TIAQSPQGDI 360 SNAEFCRSIK LLTQIVVSLS HYSNGARLVP PYPPCQFHSQ LHHEFCHEGK NQCFTYGQIG 420 QIQ

Sequence ? help Back to Top

Protein Sequence Length: 423 aa Download sequence

MGRKKVKLAF IENINERKSS YKKRLKGFIK KAHELETLCN VEMAAIICSP YHIEPKVIPN  60
NDVAISTFTK FRELPDFKQS KNMVTQKKFT EERKVKLEEQ LRKIRKENRV KDLTNKMYEM  120
LNGKDTQVCM SLNNLNDLYY VINENIKKVS EMMKGQGGGE SSTSNYQQPT IGPMVPSGSI  180
FEGPRDPLLY PTGTPVLVVP LVDPLIIPSR DNFERPRAPL LDSDVASMEM IPSEASSLVP  240
LAYTSQVSQP QINPSMSLPL MDASVPMNNN ENYSVGFPTS PPLSEMLDWN DDIIKPARRI  300
KTRGNFYVPP KDNMDRVRLA HRVQTWSRVA TSNRCQGVIL VPANLSLGRD TIAQSPQGDI  360
SNAEFCRSIK LLTQIVVSLS HYSNGARLVP PYPPCQFHSQ LHHEFCHEGK NQCFTYGQIG  420
QIQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	3	26	RKKVKLAFIENINERKSSYKKRLK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48670.1	2e-29	M-type_MADS family protein