PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT59042.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C3H

Protein Properties

Length: 698aa MW: 77411.8 Da PI: 6.4482

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT59042.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.5	3.5e-06	112	136	5	26
--SGGGGTS...--TTTTT-SS-SS CS zf-CCCH 5 lCrffartG...tCkyGdrCkFaHg 26 +C+ a++G C+y d+C+F+H+ PHT59042.1 112 ICPEVAKSGkvsACPYNDKCRFSHD 136 599999999999************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 698 aa Download sequence
MENETLIVQS PPAANPAEQR ENPLQPPSST TDDGGVTQEF RTAEELVAKA IAPVKREYLL 60 PPPSRSSNYN NTVGVENDDV AEAKSAPIIK DKKSKRQMKR ERRQELKSPL HICPEVAKSG 120 KVSACPYNDK CRFSHDVEAF KAEKPADIEG SCPFLIYEGP CPYGLACRFA GTHRDDVSAP 180 TENLPVKSSE LNFFNKDTQK LLWKNKMKFP ETEATLKLLG LKGNPKDKTL GGKGENGQVV 240 PKEPATDTKT DNNEVANDSI IPFISPEDDA DENNLADDTR PLKKAKSSVN EICSSQVSSG 300 SSVQEGILDS SCDVNKLEPA ADTVTDSDKS LKLHPREKKL IDFRDKLYLA PLTTVGNLPF 360 RRVCKVLGAD VTCGEMAMCT NLLQGQASEW ALLRRHSSEN LFGVQICGAY PDTVTKTVEL 420 IEQECSVDFI DINMGCPIDI VVNKGAGSAL LTKPMRMKSV VEAASLTVGT PVTIKVRTAY 480 FEGKNRIDSL IADMGNWGAT AVTIHGRSRQ QRYSKLADWD YIYQCVCKAP KSLQVLGNGD 540 VFSYVDWNKH KTECPELSTC MIARGALVKP WIFTEIKEQR HWDITSGERL AILKDYARFG 600 LEHWGSDSKG VETTRHFLLE WLSYTCRYVP VGLLDVIPQR INWRPPSYYG RDDLETLMAS 660 DSAADWVRIS EMLLGKVPSG FSFAPKHKSN AYDRAENG

Sequence ? help Back to Top

Protein Sequence Length: 698 aa Download sequence

MENETLIVQS PPAANPAEQR ENPLQPPSST TDDGGVTQEF RTAEELVAKA IAPVKREYLL  60
PPPSRSSNYN NTVGVENDDV AEAKSAPIIK DKKSKRQMKR ERRQELKSPL HICPEVAKSG  120
KVSACPYNDK CRFSHDVEAF KAEKPADIEG SCPFLIYEGP CPYGLACRFA GTHRDDVSAP  180
TENLPVKSSE LNFFNKDTQK LLWKNKMKFP ETEATLKLLG LKGNPKDKTL GGKGENGQVV  240
PKEPATDTKT DNNEVANDSI IPFISPEDDA DENNLADDTR PLKKAKSSVN EICSSQVSSG  300
SSVQEGILDS SCDVNKLEPA ADTVTDSDKS LKLHPREKKL IDFRDKLYLA PLTTVGNLPF  360
RRVCKVLGAD VTCGEMAMCT NLLQGQASEW ALLRRHSSEN LFGVQICGAY PDTVTKTVEL  420
IEQECSVDFI DINMGCPIDI VVNKGAGSAL LTKPMRMKSV VEAASLTVGT PVTIKVRTAY  480
FEGKNRIDSL IADMGNWGAT AVTIHGRSRQ QRYSKLADWD YIYQCVCKAP KSLQVLGNGD  540
VFSYVDWNKH KTECPELSTC MIARGALVKP WIFTEIKEQR HWDITSGERL AILKDYARFG  600
LEHWGSDSKG VETTRHFLLE WLSYTCRYVP VGLLDVIPQR INWRPPSYYG RDDLETLMAS  660
DSAADWVRIS EMLLGKVPSG FSFAPKHKSN AYDRAENG