PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT59260.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 168aa    MW: 19327.2 Da    PI: 8.9666
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT59260.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF51.31.5e-16452351
                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                +e+k  r+vtfskR+  ++ KA+ELS+ ++a+v ++++s++g+ y yss
  PHT59260.1  4 VESKDARYVTFSKRKLSLFRKANELSTFTGADVGILLISPSGNPYSYSS 52
                799******************************************9996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    
MKLVESKDAR YVTFSKRKLS LFRKANELST FTGADVGILL ISPSGNPYSY SSTSVEQITD  60
KFLEWKLKNP QVVDQAGREK ANVFQAFDDL REELQIMNEK EKSRKMRYKI LHPDSEIPVD  120
KHRLDQLIEL KLKLDAIKAA KNKILPEQFK FDLNVVPNLD EGECSGNH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.16e-16M-type_MADS family protein