PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT59264.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

HD-ZIP

Protein Properties

Length: 1150aa MW: 127372 Da PI: 6.7107

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT59264.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.8	9.1e-19	18	76	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+l++++++ps +r++L +++ +++ +q+kvWFqNrR +ek+ PHT59264.1 18 KYVRYTPEQVEALERLYHECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 76 5678*****************************************************97 PP
2	START	172.6	2.6e-54	163	371	2	205
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXX CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvael 98 laee+++e+++ka+ ++ Wv+++ +++g++++ +++ s+++sg a+ra+g+v +++ v+e+l+d++ W ++++ +++l+v s+g g+++l +++l PHT59264.1 163 LAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIIAISHGCSGVASRACGLVGLEPT-RVAEILKDRPSWFRDCRTVDVLNVMSTGtgGTIELLYMQL 260 7899****************************************************.8888888888************************** PP TTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHH CS START 99 qalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaega 193 +a+++l+p Rdf+ Ry+ +++g++v++++S++++q+ p+ + +vRa lpSg+li+p+++g+s +++v+h+dl+ ++++++lr+l++s++ + PHT59264.1 261 YAPTTLAPaRDFWLMRYTSVMEDGSLVVCERSLNNTQNGPSmppVQTFVRADILPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTLLSQ 359 ***********************************99888899************************************************ PP HHHHHHTXXXXX CS START 194 ktwvatlqrqce 205 +t++a+l+++++ PHT59264.1 360 RTTMAALRHLRQ 371 *****99876 PP

Sequence ? help Back to Top
Protein Sequence Length: 1150 aa Download sequence
MMAVTSSCKD KLGMDSGKYV RYTPEQVEAL ERLYHECPKP SSLRRQQLIR ECPILSNIEP 60 KQIKVWFQNR RCREKQRKES SRLQAVNRKL TAMNKLLMEE NDRLQKQVSQ LVYENSFFRQ 120 QTQTAALPAT DNNSCESVVT SGQHNLTPQR PPRDASPAGL LSLAEETLTE FLSKATGTAV 180 EWVQMPGMKP GPDSIGIIAI SHGCSGVASR ACGLVGLEPT RVAEILKDRP SWFRDCRTVD 240 VLNVMSTGTG GTIELLYMQL YAPTTLAPAR DFWLMRYTSV MEDGSLVVCE RSLNNTQNGP 300 SMPPVQTFVR ADILPSGYLI RPCEGGGSII HIVDHMDLEP WSVPEVLRPL YESSTLLSQR 360 TTMAALRHLR QISQEISHPT VTGWGRRPAA LRALGQRLSK GFNEAVNGFT DEGWSMLESD 420 GIDDVTILVN SSPSKLMGAN LSYANGFPSM SSAVLCAKAS MLLQNVPPSI LLRFLREHRS 480 EWADSGIDAY SAAAVKAGPC SIPVTRTGSF GGQIILPLAH TIEHEEASDF FLIISSISRT 540 PHDMIMPGDI FLLQLCNGVD DNAVGTCAEL MFAPIDASFA DDAPLLPSGF RIIPLDSKSD 600 ASSPNRTLDL ASTLEVGPAG SRPTGDHSKS SGSTKSVMTI AFQFAFEIHL QENIAAMARQ 660 YVRSIISSVQ RVALALSPSR IGSLPGLRSP PGTPEAHTLA RWICQSYRFF LGVELLKSVS 720 GGSESILKEI WDHLDALMCC SLKALPVFTF ANEAGLDMLE TTLVALQDIT LEKIFDDSGR 780 KALFSELPQI MQQGFACLQG GICLSSMGRP ISYERAVAWK VLNEEEDAHS TSWPPTGVGQ 840 FSITNPAQFP YLYHPQNPFP DPTFSEIPNP FEITMQTNDL ELKELPKKKD NQRGNRDKSK 900 FIDLINPATL NKILNDKHSP SLSITIKPLT YNDRIPRVTW MEENVDTMNM MKELQYKTVG 960 KFSYDFPNIE GIYAHVSKQC NIKVEVGKSI HLDMTTINKT KPSCTKVNVL VNLADKLPEE 1020 VEIEVISSSG KVVRVKKIKI KYDFLSRYCK NCKLQGHSEV ESAGGQAIKM AYDKLYTLLN 1080 HIVQENPEWH GDSRIATKKV AGLLELTNET ITHPEGVIDD VLIKVDVKSK YQKPELRSME 1140 KTECGVYEPS

Sequence ? help Back to Top

Protein Sequence Length: 1150 aa Download sequence

MMAVTSSCKD KLGMDSGKYV RYTPEQVEAL ERLYHECPKP SSLRRQQLIR ECPILSNIEP  60
KQIKVWFQNR RCREKQRKES SRLQAVNRKL TAMNKLLMEE NDRLQKQVSQ LVYENSFFRQ  120
QTQTAALPAT DNNSCESVVT SGQHNLTPQR PPRDASPAGL LSLAEETLTE FLSKATGTAV  180
EWVQMPGMKP GPDSIGIIAI SHGCSGVASR ACGLVGLEPT RVAEILKDRP SWFRDCRTVD  240
VLNVMSTGTG GTIELLYMQL YAPTTLAPAR DFWLMRYTSV MEDGSLVVCE RSLNNTQNGP  300
SMPPVQTFVR ADILPSGYLI RPCEGGGSII HIVDHMDLEP WSVPEVLRPL YESSTLLSQR  360
TTMAALRHLR QISQEISHPT VTGWGRRPAA LRALGQRLSK GFNEAVNGFT DEGWSMLESD  420
GIDDVTILVN SSPSKLMGAN LSYANGFPSM SSAVLCAKAS MLLQNVPPSI LLRFLREHRS  480
EWADSGIDAY SAAAVKAGPC SIPVTRTGSF GGQIILPLAH TIEHEEASDF FLIISSISRT  540
PHDMIMPGDI FLLQLCNGVD DNAVGTCAEL MFAPIDASFA DDAPLLPSGF RIIPLDSKSD  600
ASSPNRTLDL ASTLEVGPAG SRPTGDHSKS SGSTKSVMTI AFQFAFEIHL QENIAAMARQ  660
YVRSIISSVQ RVALALSPSR IGSLPGLRSP PGTPEAHTLA RWICQSYRFF LGVELLKSVS  720
GGSESILKEI WDHLDALMCC SLKALPVFTF ANEAGLDMLE TTLVALQDIT LEKIFDDSGR  780
KALFSELPQI MQQGFACLQG GICLSSMGRP ISYERAVAWK VLNEEEDAHS TSWPPTGVGQ  840
FSITNPAQFP YLYHPQNPFP DPTFSEIPNP FEITMQTNDL ELKELPKKKD NQRGNRDKSK  900
FIDLINPATL NKILNDKHSP SLSITIKPLT YNDRIPRVTW MEENVDTMNM MKELQYKTVG  960
KFSYDFPNIE GIYAHVSKQC NIKVEVGKSI HLDMTTINKT KPSCTKVNVL VNLADKLPEE  1020
VEIEVISSSG KVVRVKKIKI KYDFLSRYCK NCKLQGHSEV ESAGGQAIKM AYDKLYTLLN  1080
HIVQENPEWH GDSRIATKKV AGLLELTNET ITHPEGVIDD VLIKVDVKSK YQKPELRSME  1140
KTECGVYEPS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52150.1	0.0	HD-ZIP family protein