PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT59330.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB

Protein Properties

Length: 334aa MW: 37604.6 Da PI: 8.9897

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT59330.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54	3.8e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l +++++G g+W++ + + g++R++k+c++rw +yl PHT59330.1 14 KGPWTPEEDQKLTYYIEKHGCGSWRALPTKAGLKRCGKSCRLRWINYL 61 79********************************************97 PP
2	Myb_DNA-binding	50.4	5.2e-16	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ +E++ +++++++lG++ W++Ia ++ +Rt++++k++w+++l PHT59330.1 67 RGKFSLQEEQTIIQLHALLGNR-WSAIATHLA-NRTDNEIKNYWNTHL 112 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence
MGRSPCCEKV GLKKGPWTPE EDQKLTYYIE KHGCGSWRAL PTKAGLKRCG KSCRLRWINY 60 LRPDIKRGKF SLQEEQTIIQ LHALLGNRWS AIATHLANRT DNEIKNYWNT HLKKRLTKMG 120 IDPNTHKPRS NFGSANLSHI AQWENARLEA EARLVRESKK QQQQIILINN NINNYNNIHF 180 GTNNLGTKNV LLPLQTKLPS LPCLDVLKAW QGGANWSNRP KIVKDKFFDN FPASSTSLSN 240 NNLLLMVPCN NNNNNILGAG LVNTCLVGAG SFLGDNINEI SSYSSYPCLN DIQGFTQLES 300 VFGSCEDDYD NNDNNYWNTI LNSCTSLADG SPVF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15310.1	6e-94	MYB family protein