PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT59720.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MIKC_MADS

Protein Properties

Length: 257aa MW: 29047.8 Da PI: 7.0365

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT59720.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	90.2	1e-28	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k ien nrqvtfskRr+g+lKKA+ELSvLCd evaviifsstgkl+e+ss PHT59720.1 9 KLIENVNNRQVTFSKRRAGLLKKASELSVLCDSEVAVIIFSSTGKLFEFSS 59 569**********************************************96 PP
2	K-box	54.1	6.9e-19	95	174	9	88
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelq 88 ++++ ++ q+e++ Lk+e+ +L+++q +llG+dL+ + l+eL+ Le+qL+++l i+++K+ell++q+e+++k+ +el+ PHT59720.1 95 QQTHFLKQEQKEVDSLKDELAKLKTKQLRLLGKDLNGMGLNELRLLEHQLNEGLLAIKERKEELLIQQLEHSRKQVEELR 174 44445678899****************************************************************99986 PP

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence
MGRGKIDIKL IENVNNRQVT FSKRRAGLLK KASELSVLCD SEVAVIIFSS TGKLFEFSST 60 SMKQTLSRYN RCVSSTESSA VEKKSEGNEQ PQSQQQTHFL KQEQKEVDSL KDELAKLKTK 120 QLRLLGKDLN GMGLNELRLL EHQLNEGLLA IKERKEELLI QQLEHSRKQV EELRGLYPVS 180 SCLPTAYLEY HHPLEKKYPI LKESEESLDS DTACEDGVDN EDSNTTLQLG LPTIGRKRKK 240 PEQESPSSNS ENQVGSK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	236	240	RKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13790.1	4e-61	MIKC_MADS family protein