PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT59841.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GRAS
Protein Properties Length: 692aa    MW: 78904.9 Da    PI: 4.8482
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT59841.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS304.62.4e-932185881374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.....sseelaalklfsevsPilkfs 94 
                 lv+ Ll+++e v++++++la++l++r    as +g+p+qRl +yf++AL++r++rs+ +   + + ++    +     s  + aa  + +++ P+ ++ 
  PHT59841.1 218 LVHHLLAAVEEVNNQQFHLASKLISRCMWVASDSGTPVQRLSFYFAKALEERIHRSTGRYTCTDEDRHL---KyiktkSLGTNAASLTCHQLIPFNQVM 313
                 6899***************************************************44433322222222...12222244444455559********** PP

        GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlele 192
                 +++a q+I+e v++++++H+iDf++  G+QW+ L+qaLa++ e+p   l+iT+vgs   ++ke++e tg+ L++fA++lg+pf+f+++ +++++d++ e
  PHT59841.1 314 QFAAVQTIVENVKSAKKIHVIDFNVRSGIQWIVLIQALAEKGESPIeLLKITAVGS---TEKENYEVTGNTLHSFAKSLGLPFSFDIVFVSDMKDFKKE 409
                 ****************************************996655499*******...579************************************* PP

        GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellg 291
                 +++++++E++aV l + l ++  ++ +l    d+++k+v+s++P+v+vv e ea+hns+sFl+rf+e+l +ysa+fd++e  + r+s  r+++E++++g
  PHT59841.1 410 SINIETDETVAVYLNFILRTMIPRPDCL----DNLMKVVRSIRPTVIVVGEVEANHNSPSFLNRFIETLFFYSAFFDCFEDCMDRDSPCRTTIEEVYFG 504
                 ****************999999555555....55***************************************************************** PP

        GRAS 292 reivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 + ++n+va+eg++r+ r+ +le Wr+ +e++G+ + +lse+   qa+l+l++++ s    ++++ + l++gWk+ p+ s+S W+
  PHT59841.1 505 EGVRNIVAAEGEDRFTRNVKLEVWRAFFERFGMMEEELSESSWYQADLILKQFAqSSSCDLHKDGKGLIIGWKGTPIHSLSIWK 588
                 ******************************************************8899*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 692 aa     Download sequence    
MANVSISTEN FSDFQDDQFH LNGYEGGELV VNGIEDPWFE HIDYVDIDSF YSMFGPNNEE  60
DTSDLQVRIN LLEDQQQSIS DWMQNHFPTN TVMPLQPVQI EPTVEIPGND DLQTQVPERG  120
NDSNEKPNPF SLASLELLKN YGRVSKNSSE ENLSTNALNF EACLGNRHKL SMEEILRVAA  180
ERYIQYSTRK RDGLSRFIHP YGSALSGLCM EETRDVELVH HLLAAVEEVN NQQFHLASKL  240
ISRCMWVASD SGTPVQRLSF YFAKALEERI HRSTGRYTCT DEDRHLKYIK TKSLGTNAAS  300
LTCHQLIPFN QVMQFAAVQT IVENVKSAKK IHVIDFNVRS GIQWIVLIQA LAEKGESPIE  360
LLKITAVGST EKENYEVTGN TLHSFAKSLG LPFSFDIVFV SDMKDFKKES INIETDETVA  420
VYLNFILRTM IPRPDCLDNL MKVVRSIRPT VIVVGEVEAN HNSPSFLNRF IETLFFYSAF  480
FDCFEDCMDR DSPCRTTIEE VYFGEGVRNI VAAEGEDRFT RNVKLEVWRA FFERFGMMEE  540
ELSESSWYQA DLILKQFAQS SSCDLHKDGK GLIIGWKGTP IHSLSIWKFL RDYKLCKSAQ  600
LSTFFSTADS LENVGSYPKS SWYYMSDSSE CEKFTKMMAA AGDTKRDKAE NYSIEHLVDD  660
MAGAEDCFEG RRIHISRTKN RCLQKFSGVE VA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.16e-58GRAS family protein