PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT59842.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GRAS
Protein Properties Length: 564aa    MW: 63455.6 Da    PI: 5.8139
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT59842.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS291.13.1e-891935622374
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaalkl.fsevsPilkfshlt 97 
                  + Ll++Ae vs+++  +a+++L++ + las++g+++qR ++yf++AL +r+ r++  l  ++++++++ ++  ++ +l+a ++ +++  P+ ++ h+t
  PHT59842.1 193 AQILLAAAEKVSEQQYDRARKFLSQCQLLASKAGNTVQREVFYFAQALGERIDRETGILTPKISAETNELNSicTAPRLHASHVaLHQEVPFTQVVHFT 291
                 689***************************************************5555555555555554447788888888889************** PP

        GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195
                   qaIle+v+++++vH iDf i  G+QW++L+qa a+R+ ++  ++ iT+++s   ++k+++e+tg+ L++fA++l+ pf+f+++   + ++l+ +++ 
  PHT59842.1 292 GIQAILESVATKSKVHLIDFHIRTGVQWASLIQAAAERKdNPIEHMNITVIES---VNKQRVEKTGKSLESFATSLNFPFSFKIVFLPDRNQLTKDHFY 387
                 **************************************955566*********...78**************************9999*********** PP

        GRAS 196 vkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgrei 294
                 ++++E ++++ ++ l  +  e+ +le      +++vk+l+P ++vv+e ea++ns+ F++rf+++l yysalfd+le  + r++++r+++E+   g  i
  PHT59842.1 388 IETDEGVVIHAAFFLRAMICEPNCLET----AMRVVKQLQPSLMVVSEVEANLNSPVFVNRFIDSLFYYSALFDCLEDVMKRDDQHRMTIEES-YGGGI 481
                 *******************88888888....**************************************************************.899** PP

        GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  n+v  eg+er+ r  +l  Wr+ l+++G+++v+ls++   qa+l++++++  d  + + + gsl   Wk+ p++s+SaW+
  PHT59842.1 482 LNIVGSEGEERVIRSVNLDVWRSFLGRFGMEEVKLSDTCLYQANLIIQQFDcRDSCSADMNGGSLAVSWKGTPIYSTSAWK 562
                 ***************************************************99999999*********************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 564 aa     Download sequence    
MSNPLFHLAS FTSNQIPESD GSLRGCRVNI AKSDNHLSVM EDSTDIQNFY TNYGFYQGYA  60
VNQQEQEMNK QQQEMNVYAA HSADQLSQGE VKLNSLETGS NVGEVPFLSL APFELLRNNP  120
SKHKNTEGDK ARDVNGGANV HQKLSAMHIM RLAGERFIQF SSNKFININN LLHPYGSALS  180
YLSTEDNQDV ELAQILLAAA EKVSEQQYDR ARKFLSQCQL LASKAGNTVQ REVFYFAQAL  240
GERIDRETGI LTPKISAETN ELNSICTAPR LHASHVALHQ EVPFTQVVHF TGIQAILESV  300
ATKSKVHLID FHIRTGVQWA SLIQAAAERK DNPIEHMNIT VIESVNKQRV EKTGKSLESF  360
ATSLNFPFSF KIVFLPDRNQ LTKDHFYIET DEGVVIHAAF FLRAMICEPN CLETAMRVVK  420
QLQPSLMVVS EVEANLNSPV FVNRFIDSLF YYSALFDCLE DVMKRDDQHR MTIEESYGGG  480
ILNIVGSEGE ERVIRSVNLD VWRSFLGRFG MEEVKLSDTC LYQANLIIQQ FDCRDSCSAD  540
MNGGSLAVSW KGTPIYSTSA WKFH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17490.13e-58GRAS family protein