PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT60016.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C3H

Protein Properties

Length: 489aa MW: 51156.4 Da PI: 8.2556

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT60016.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	36.1	1.1e-11	52	76	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C +++rtG+C yG+rC+F+H++ PHT60016.1 52 EPDCIYYLRTGFCGYGGRCRFNHPR 76 799********************96 PP
2	zf-CCCH	37.9	2.9e-12	97	122	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C++++rtG Ck+G++Ck++H++ PHT60016.1 97 GQPVCQYYMRTGMCKFGASCKYHHPR 122 5789********************96 PP
3	zf-CCCH	35.9	1.3e-11	143	168	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++ +tG+Ck+G +CkF+H++ PHT60016.1 143 GEKECSYYVKTGQCKFGVTCKFNHPQ 168 7899********************97 PP
4	zf-CCCH	35.2	2e-11	316	339	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +C++++++G CkyG++C+++H+p PHT60016.1 316 QECQYYMKYGDCKYGSTCRYHHPP 339 58********************97 PP
5	zf-CCCH	35.6	1.5e-11	361	385	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++C++fa++G Ck+G++CkF H++ PHT60016.1 361 APICSHFAQNGVCKFGPSCKFDHPM 385 589********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 489 aa Download sequence
MERYSGTQAM EGAPVDPVSE WTVPGGETGL EEPMWQLSVG TGPEAYPERP NEPDCIYYLR 60 TGFCGYGGRC RFNHPRDRTS VLGAMRATGG EYPERMGQPV CQYYMRTGMC KFGASCKYHH 120 PRQGGGSPAP VTVNVYGYPL RPGEKECSYY VKTGQCKFGV TCKFNHPQPA GAQVPAPAAG 180 PGPLTAPAAV PAPHIYPPVQ SPSVQSAQQY GVVSGNWPVA RPTLLPGSYI PGTYGSMLLP 240 PGMVPLPGWS PYPAPVSPVP SPSTQLPAAA GPIYGLSQLS PSAPAYTGPY LSVPSSAGPS 300 SSSQKEPAFP ERPGLQECQY YMKYGDCKYG STCRYHHPPE WSGPKTSFIL SAMGLPLRPG 360 APICSHFAQN GVCKFGPSCK FDHPMGMSYS SSSSSLADMA VAPYPVGSAV GTLAPSSSSS 420 DLRPELVSGS GRDGFSTQLS SMNSASGSVG SMFSKGGPSH SGAQKSVQSS NPSSSSSSAG 480 HGSEGRTSN

Sequence ? help Back to Top

Protein Sequence Length: 489 aa Download sequence

MERYSGTQAM EGAPVDPVSE WTVPGGETGL EEPMWQLSVG TGPEAYPERP NEPDCIYYLR  60
TGFCGYGGRC RFNHPRDRTS VLGAMRATGG EYPERMGQPV CQYYMRTGMC KFGASCKYHH  120
PRQGGGSPAP VTVNVYGYPL RPGEKECSYY VKTGQCKFGV TCKFNHPQPA GAQVPAPAAG  180
PGPLTAPAAV PAPHIYPPVQ SPSVQSAQQY GVVSGNWPVA RPTLLPGSYI PGTYGSMLLP  240
PGMVPLPGWS PYPAPVSPVP SPSTQLPAAA GPIYGLSQLS PSAPAYTGPY LSVPSSAGPS  300
SSSQKEPAFP ERPGLQECQY YMKYGDCKYG STCRYHHPPE WSGPKTSFIL SAMGLPLRPG  360
APICSHFAQN GVCKFGPSCK FDHPMGMSYS SSSSSLADMA VAPYPVGSAV GTLAPSSSSS  420
DLRPELVSGS GRDGFSTQLS SMNSASGSVG SMFSKGGPSH SGAQKSVQSS NPSSSSSSAG  480
HGSEGRTSN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18550.1	1e-125	C3H family protein