PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT60017.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C3H

Protein Properties

Length: 82aa MW: 9172.17 Da PI: 4.549

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT60017.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	39.8	7.8e-13	52	76	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C +++rtG+C yG+rC+F+H++ PHT60017.1 52 EPDCIYYLRTGFCGYGGRCRFNHPR 76 799********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 82 aa Download sequence
MERYSGTQAM EGAPVDPVSE WTVPGGETGL EEPMWQLSVG TGPEAYPERP NEPDCIYYLR 60 TGFCGYGGRC RFNHPRDRTS VK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06410.1	4e-29	C3H family protein